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almahmoud/terra-jupyter-bioconductor:3.18

Manifest digest

sha256:12d2730088d043e7ef6e29d95d6f734a8cc634d7d76206f96872d427bb4d266e

OS/ARCH

linux/amd64

Compressed size

9.88 GB

Last pushed

almost 3 years by almahmoud

Type

Image

Manifest digest

sha256:12d2730088d043e7ef6e29d95d6f734a8cc634d7d76206f96872d427bb4d266e

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=20.040 B
5ADD file ... in / 27.26 MB
6CMD ["/bin/bash"]0 B
7ENV NVARCH=x86_640 B
8ENV NVIDIA_REQUIRE_CUDA=cuda>=11.3 brand=tesla,driver>=418,driver<419 driver>=4500 B
9ENV NV_CUDA_CUDART_VERSION=11.3.109-10 B
10ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-11-30 B
11ARG TARGETARCH0 B
12LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
13RUN |1 TARGETARCH=amd64 /bin/sh -c7.58 MB
14ENV CUDA_VERSION=11.3.10 B
15RUN |1 TARGETARCH=amd64 /bin/sh -c10.79 MB
16RUN |1 TARGETARCH=amd64 /bin/sh -c186 B
17ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
18ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B
19COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB
20ENV NVIDIA_VISIBLE_DEVICES=all0 B
21ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B
22ENV NV_CUDA_LIB_VERSION=11.3.1-10 B
23ENV NV_NVTX_VERSION=11.3.109-10 B
24ENV NV_LIBNPP_VERSION=11.3.3.95-10 B
25ENV NV_LIBNPP_PACKAGE=libnpp-11-3=11.3.3.95-10 B
26ENV NV_LIBCUSPARSE_VERSION=11.6.0.109-10 B
27ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-11-30 B
28ENV NV_LIBCUBLAS_VERSION=11.5.1.109-10 B
29ENV NV_LIBCUBLAS_PACKAGE=libcublas-11-3=11.5.1.109-10 B
30ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B
31ENV NV_LIBNCCL_PACKAGE_VERSION=2.9.9-10 B
32ENV NCCL_VERSION=2.9.9-10 B
33ENV NV_LIBNCCL_PACKAGE=libnccl2=2.9.9-1+cuda11.30 B
34ARG TARGETARCH0 B
35LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
36RUN |1 TARGETARCH=amd64 /bin/sh -c973.68 MB
37RUN |1 TARGETARCH=amd64 /bin/sh -c60.52 KB
38COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.64 KB
39COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB
40ENV NVIDIA_PRODUCT_NAME=CUDA0 B
41ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B
42ENV NV_CUDA_LIB_VERSION=11.3.1-10 B
43ENV NV_CUDA_CUDART_DEV_VERSION=11.3.109-10 B
44ENV NV_NVML_DEV_VERSION=11.3.58-10 B
45ENV NV_LIBCUSPARSE_DEV_VERSION=11.6.0.109-10 B
46ENV NV_LIBNPP_DEV_VERSION=11.3.3.95-10 B
47ENV NV_LIBNPP_DEV_PACKAGE=libnpp-dev-11-3=11.3.3.95-10 B
48ENV NV_LIBCUBLAS_DEV_VERSION=11.5.1.109-10 B
49ENV NV_LIBCUBLAS_DEV_PACKAGE_NAME=libcublas-dev-11-30 B
50ENV NV_LIBCUBLAS_DEV_PACKAGE=libcublas-dev-11-3=11.5.1.109-10 B
51ENV NV_CUDA_NSIGHT_COMPUTE_VERSION=11.3.0-10 B
52ENV NV_CUDA_NSIGHT_COMPUTE_DEV_PACKAGE=cuda-nsight-compute-11-3=11.3.0-10 B
53ENV NV_NVPROF_VERSION=11.3.111-10 B
54ENV NV_NVPROF_DEV_PACKAGE=cuda-nvprof-11-3=11.3.111-10 B
55ENV NV_LIBNCCL_DEV_PACKAGE_NAME=libnccl-dev0 B
56ENV NV_LIBNCCL_DEV_PACKAGE_VERSION=2.9.9-10 B
57ENV NCCL_VERSION=2.9.9-10 B
58ENV NV_LIBNCCL_DEV_PACKAGE=libnccl-dev=2.9.9-1+cuda11.30 B
59ARG TARGETARCH0 B
60LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
61RUN |1 TARGETARCH=amd64 /bin/sh -c1.46 GB
62RUN |1 TARGETARCH=amd64 /bin/sh -c83.42 KB
63ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B
64ENV NV_CUDNN_VERSION=8.2.0.530 B
65ENV NV_CUDNN_PACKAGE_NAME=libcudnn80 B
66ENV NV_CUDNN_PACKAGE=libcudnn8=8.2.0.53-1+cuda11.30 B
67ENV NV_CUDNN_PACKAGE_DEV=libcudnn8-dev=8.2.0.53-1+cuda11.30 B
68ARG TARGETARCH0 B
69LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
70LABEL com.nvidia.cudnn.version=8.2.0.530 B
71RUN |1 TARGETARCH=amd64 /bin/sh -c1.74 GB
72LABEL com.google.environment=Container: Minimal0 B
73ENV GCSFUSE_METADATA_IMAGE_TYPE=DLC0 B
74ENV LC_ALL=C.UTF-80 B
75ENV LANG=C.UTF-80 B
76ARG DEBIAN_FRONTEND=noninteractive0 B
77RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c369.3 MB
78COPY build/vm/packer/base/aptget-requirements.txt /aptget-requirements.txt # buildkit407 B
79RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c32 B
80RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c248.01 MB
81RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c228.52 MB
82RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c32.27 MB
83RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c798.17 KB
84RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c7.46 MB
85COPY build/vm/packer/generic/packages /opt/google # buildkit34.02 KB
86COPY build/container/install_packages.sh /install_packages.sh # buildkit626 B
87ARG PY_VERSION0 B
88ENV ANACONDA_PYTHON_VERSION=3.100 B
89ENV DL_ANACONDA_HOME=/opt/conda0 B
90RUN |2 DEBIAN_FRONTEND=noninteractive PY_VERSION=3.10 /bin/sh160.97 MB
91ENV PATH=/opt/conda/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
92ENV SHELL=/bin/bash0 B
93EXPOSE map[8080/tcp:{}]0 B
94VOLUME [/home/jupyter]0 B
95ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/lib:/usr/local/lib/x86_64-linux-gnu:/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B
96RUN |2 DEBIAN_FRONTEND=noninteractive PY_VERSION=3.10 /bin/sh759 B
97RUN |2 DEBIAN_FRONTEND=noninteractive PY_VERSION=3.10 /bin/sh4.37 KB
98RUN |2 DEBIAN_FRONTEND=noninteractive PY_VERSION=3.10 /bin/sh2.26 KB
99COPY build/package/packages/jupyter/ipython_kernel_config.py /etc/ipython/ipython_kernel_config.py # buildkit337 B
100COPY build/package/packages/jupyter/jupyter_notebook_config.py /opt/jupyter/.jupyter/jupyter_notebook_config.py # buildkit3.14 KB
101COPY build/package/conda/channels.json /opt/google/conda/channels.json # buildkit330 B
102COPY build/container/entrypoint.sh /entrypoint.sh # buildkit275 B
103RUN |2 DEBIAN_FRONTEND=noninteractive PY_VERSION=3.10 /bin/sh277 B
104ENTRYPOINT ["/entrypoint.sh"]0 B
105COPY build/container/run_jupyter.sh /run_jupyter.sh # buildkit315 B
106RUN |2 DEBIAN_FRONTEND=noninteractive PY_VERSION=3.10 /bin/sh317 B
107CMD ["/run_jupyter.sh"]0 B
108ARG VERSION0 B
109LABEL com.google.environment=Container: TensorFlow 2-110 B
110ARG CONTAINER_NAME0 B
111ENV CONTAINER_NAME=tf2-gpu/2-11+cu1130 B
112ARG DEBIAN_FRONTEND=noninteractive0 B
113RUN |3 VERSION=2-11 CONTAINER_NAME=tf2-gpu/2-11+cu113 DEBIAN_FRONTEND=noninteractive185.15 KB
114RUN |3 VERSION=2-11 CONTAINER_NAME=tf2-gpu/2-11+cu113 DEBIAN_FRONTEND=noninteractive1.25 GB
115RUN |3 VERSION=2-11 CONTAINER_NAME=tf2-gpu/2-11+cu113 DEBIAN_FRONTEND=noninteractive2.43 KB
116ENV NODE_OPTIONS=--max-old-space-size=40960 B
117ARG ENABLE_MULTI_ENV0 B
118ENV ENABLE_MULTI_ENV=false0 B
119RUN |4 VERSION=2-11 CONTAINER_NAME=tf2-gpu/2-11+cu113 DEBIAN_FRONTEND=noninteractive1.49 GB
120ENV NODE_OPTIONS=0 B
121RUN |4 VERSION=2-11 CONTAINER_NAME=tf2-gpu/2-11+cu113 DEBIAN_FRONTEND=noninteractive42.38 MB
122ARG RELEASE0 B
123ARG PY_VERSION_TAG0 B
124ARG LICENSE_GCS_PATH=tf2-gpu/2-11+cu113-py3100 B
125RUN |7 VERSION=2-11 CONTAINER_NAME=tf2-gpu/2-11+cu113 DEBIAN_FRONTEND=noninteractive142.62 MB
126USER root0 B
127ENV DEBIAN_FRONTEND=noninteractive0 B
128RUN /bin/sh -c sudo -i890 B
129RUN /bin/sh -c sudo -i910 B
130RUN /bin/sh -c rm /etc/apt/sources.list.d/cuda.list277.24 KB
131RUN /bin/sh -c curl https://packages.cloud.google.com/apt/doc/apt-key.gpg170 B
132RUN /bin/sh -c curl https://packages.cloud.google.com/apt/doc/apt-key.gpg159 B
133RUN /bin/sh -c apt-get update237.67 MB
134ENV LC_ALL=en_US.UTF-80 B
135ENV USER=jupyter0 B
136RUN /bin/sh -c usermod -g3 KB
137ENV HOME=/home/jupyter0 B
138ENV WELDER_USER=welder-user0 B
139ENV WELDER_UID=10010 B
140RUN /bin/sh -c useradd -m4.48 KB
141ENV JUPYTER_PORT=80000 B
142ENV JUPYTER_HOME=/etc/jupyter0 B
143RUN /bin/sh -c pip3 -V43.99 MB
144RUN /bin/sh -c mkdir -p207 B
145ENV PIP_USER=true0 B
146ENV PATH=/opt/conda/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/jupyter/.local/bin:/home/jupyter/packages/bin0 B
147COPY scripts /etc/jupyter/scripts # buildkit2.11 KB
148COPY custom /etc/jupyter/custom # buildkit14.21 KB
149COPY jupyter_notebook_config.py /etc/jupyter # buildkit887 B
150RUN /bin/sh -c curl -o3.04 KB
151RUN /bin/sh -c chown -R17.03 KB
152RUN /bin/sh -c NODE_OPTIONS=--max-old-space-size=4096 jupyter122.36 MB
153USER jupyter0 B
154EXPOSE map[8000/tcp:{}]0 B
155WORKDIR /home/jupyter32 B
156ENTRYPOINT ["/opt/conda/bin/jupyter" "notebook"]0 B
157USER root0 B
158COPY dir:80a4846391e2e4d422662e48822e910092bf399f24cb1f52f86843bd69695e24 in /etc/jupyter/scripts 3.96 KB
159ENV TERRA_R_PLATFORM=terra-jupyter-r-1.1.40 B
160ENV TERRA_R_PLATFORM_BINARY_VERSION=3.180 B
161/bin/sh -c cd /tmp 112.31 MB
162/bin/sh -c find $JUPYTER_HOME/scripts -name2.24 KB
163/bin/sh -c apt-get update 316.17 MB
164ENV LIBSBML_CFLAGS=-I/usr/include0 B
165ENV LIBSBML_LIBS=-lsbml0 B
166/bin/sh -c echo 'export LIBSBML_CFLAGS="-I/usr/include"'464 B
167ENV PIP_USER=false0 B
168/bin/sh -c pip3 -V 8.59 MB
169/bin/sh -c R -e 'install.packages("BiocManager")'277.57 MB
170/bin/sh -c R -e 'BiocManager::install(c(192.02 MB
171ENV PIP_USER=true0 B
172/bin/sh -c R -e 'IRkernel::installspec(user=FALSE)'469.62 MB
173USER jupyter0 B

Command

 ARG RELEASE