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almahmoud/terra-jupyter:bioc

Manifest digest

sha256:9ff866ca8bd578c3c1099ae34517c6014facb6897dd86d13b938533605b90977

OS/ARCH

linux/amd64

Compressed size

8.06 GB

Last pushed

almost 4 years by almahmoud

Type

Image

Manifest digest

sha256:9ff866ca8bd578c3c1099ae34517c6014facb6897dd86d13b938533605b90977

Image Layers

Image Layers

1ADD file ... in / 27.24 MB
2CMD ["bash"]0 B
3ENV NVARCH=x86_640 B
4ENV NVIDIA_REQUIRE_CUDA=cuda>=11.3 brand=tesla,driver>=418,driver<419 brand=tesla,driver>=440,driver<441 driver>=4500 B
5ENV NV_CUDA_CUDART_VERSION=11.3.109-10 B
6ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-11-30 B
7ENV NV_ML_REPO_ENABLED=10 B
8ENV NV_ML_REPO_URL=https://developer.download.nvidia.com/compute/machine-learning/repos/ubuntu2004/x86_640 B
9ARG TARGETARCH0 B
10LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
11RUN |1 TARGETARCH=amd64 /bin/sh -c7.56 MB
12ENV CUDA_VERSION=11.3.10 B
13RUN |1 TARGETARCH=amd64 /bin/sh -c10.79 MB
14RUN |1 TARGETARCH=amd64 /bin/sh -c185 B
15ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
16ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B
17COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.28 KB
18ENV NVIDIA_VISIBLE_DEVICES=all0 B
19ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B
20ENV NV_CUDA_LIB_VERSION=11.3.1-10 B
21ENV NV_NVTX_VERSION=11.3.109-10 B
22ENV NV_LIBNPP_VERSION=11.3.3.95-10 B
23ENV NV_LIBNPP_PACKAGE=libnpp-11-3=11.3.3.95-10 B
24ENV NV_LIBCUSPARSE_VERSION=11.6.0.109-10 B
25ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-11-30 B
26ENV NV_LIBCUBLAS_VERSION=11.5.1.109-10 B
27ENV NV_LIBCUBLAS_PACKAGE=libcublas-11-3=11.5.1.109-10 B
28ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B
29ENV NV_LIBNCCL_PACKAGE_VERSION=2.9.9-10 B
30ENV NCCL_VERSION=2.9.9-10 B
31ENV NV_LIBNCCL_PACKAGE=libnccl2=2.9.9-1+cuda11.30 B
32ARG TARGETARCH0 B
33LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
34RUN |1 TARGETARCH=amd64 /bin/sh -c973.68 MB
35RUN |1 TARGETARCH=amd64 /bin/sh -c60.56 KB
36ENV NV_CUDA_LIB_VERSION=11.3.1-10 B
37ENV NV_CUDA_CUDART_DEV_VERSION=11.3.109-10 B
38ENV NV_NVML_DEV_VERSION=11.3.58-10 B
39ENV NV_LIBCUSPARSE_DEV_VERSION=11.6.0.109-10 B
40ENV NV_LIBNPP_DEV_VERSION=11.3.3.95-10 B
41ENV NV_LIBNPP_DEV_PACKAGE=libnpp-dev-11-3=11.3.3.95-10 B
42ENV NV_LIBCUBLAS_DEV_VERSION=11.5.1.109-10 B
43ENV NV_LIBCUBLAS_DEV_PACKAGE_NAME=libcublas-dev-11-30 B
44ENV NV_LIBCUBLAS_DEV_PACKAGE=libcublas-dev-11-3=11.5.1.109-10 B
45ENV NV_LIBNCCL_DEV_PACKAGE_NAME=libnccl-dev0 B
46ENV NV_LIBNCCL_DEV_PACKAGE_VERSION=2.9.9-10 B
47ENV NCCL_VERSION=2.9.9-10 B
48ENV NV_LIBNCCL_DEV_PACKAGE=libnccl-dev=2.9.9-1+cuda11.30 B
49ARG TARGETARCH0 B
50LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
51RUN |1 TARGETARCH=amd64 /bin/sh -c1.14 GB
52RUN |1 TARGETARCH=amd64 /bin/sh -c82.89 KB
53ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B
54ENV NV_CUDNN_VERSION=8.2.0.530 B
55ENV NV_CUDNN_PACKAGE=libcudnn8=8.2.0.53-1+cuda11.30 B
56ENV NV_CUDNN_PACKAGE_DEV=libcudnn8-dev=8.2.0.53-1+cuda11.30 B
57ENV NV_CUDNN_PACKAGE_NAME=libcudnn80 B
58ARG TARGETARCH0 B
59LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
60LABEL com.nvidia.cudnn.version=8.2.0.530 B
61RUN |1 TARGETARCH=amd64 /bin/sh -c1.74 GB
62LABEL com.google.environment=Container: Minimal0 B
63ENV LC_ALL=C.UTF-80 B
64ENV LANG=C.UTF-80 B
65ARG DEBIAN_FRONTEND=noninteractive0 B
66COPY images/build/packer/base/aptget-requirements.txt /aptget-requirements.txt # buildkit418 B
67RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c252.16 MB
68RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c198.37 MB
69RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c24.61 MB
70COPY packages /opt/google # buildkit11.73 KB
71ENV ANACONDA_PYTHON_VERSION=3.70 B
72ENV DL_ANACONDA_HOME=/opt/conda0 B
73RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c168.55 MB
74ENV PATH=/opt/conda/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
75ENV SHELL=/bin/bash0 B
76EXPOSE map[8080/tcp:{}]0 B
77VOLUME [/home/jupyter]0 B
78ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64:/usr/local/cuda/lib:/usr/local/lib/x86_64-linux-gnu:/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B
79RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c771 B
80RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c4.46 KB
81RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c2.27 KB
82COPY packages/jupyter/ipython_kernel_config.py /etc/ipython/ipython_kernel_config.py # buildkit362 B
83COPY packages/jupyter/jupyter_notebook_config.py /opt/jupyter/.jupyter/jupyter_notebook_config.py # buildkit2.41 KB
84COPY container/entrypoint.sh /entrypoint.sh # buildkit230 B
85RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c231 B
86ENTRYPOINT ["/entrypoint.sh"]0 B
87COPY container/run_jupyter.sh /run_jupyter.sh # buildkit256 B
88RUN |1 DEBIAN_FRONTEND=noninteractive /bin/sh -c256 B
89CMD ["/run_jupyter.sh"]0 B
90ARG VERSION0 B
91LABEL com.google.environment=Container: TensorFlow 2-70 B
92ARG CONTAINER_NAME0 B
93ARG CONTAINER_URL0 B
94ENV CONTAINER_NAME=tf2-gpu/2-7+cu1130 B
95ENV CONTAINER_URL=gcr.io/deeplearning-platform-release/tf-gpu.2-7:nightly-2022-02-260 B
96ARG DEBIAN_FRONTEND=noninteractive0 B
97RUN |4 VERSION=2-7 CONTAINER_NAME=tf2-gpu/2-7+cu113 CONTAINER_URL=gcr.io/deeplearning-platform-release/tf-gpu.2-7:nightly-2022-02-26184.82 KB
98RUN |4 VERSION=2-7 CONTAINER_NAME=tf2-gpu/2-7+cu113 CONTAINER_URL=gcr.io/deeplearning-platform-release/tf-gpu.2-7:nightly-2022-02-26390.6 MB
99RUN |4 VERSION=2-7 CONTAINER_NAME=tf2-gpu/2-7+cu113 CONTAINER_URL=gcr.io/deeplearning-platform-release/tf-gpu.2-7:nightly-2022-02-261.24 GB
100RUN |4 VERSION=2-7 CONTAINER_NAME=tf2-gpu/2-7+cu113 CONTAINER_URL=gcr.io/deeplearning-platform-release/tf-gpu.2-7:nightly-2022-02-2642.28 MB
101RUN |4 VERSION=2-7 CONTAINER_NAME=tf2-gpu/2-7+cu113 CONTAINER_URL=gcr.io/deeplearning-platform-release/tf-gpu.2-7:nightly-2022-02-26228.99 MB
102RUN |4 VERSION=2-7 CONTAINER_NAME=tf2-gpu/2-7+cu113 CONTAINER_URL=gcr.io/deeplearning-platform-release/tf-gpu.2-7:nightly-2022-02-2642.38 MB
103RUN |4 VERSION=2-7 CONTAINER_NAME=tf2-gpu/2-7+cu113 CONTAINER_URL=gcr.io/deeplearning-platform-release/tf-gpu.2-7:nightly-2022-02-261002.51 KB
104USER root0 B
105ENV DEBIAN_FRONTEND=noninteractive0 B
106/bin/sh -c sudo -i 882 B
107/bin/sh -c sudo -i 904 B
108/bin/sh -c rm /etc/apt/sources.list.d/cuda.list 281.23 KB
109/bin/sh -c apt-get update &&384.78 MB
110ENV LC_ALL=en_US.UTF-80 B
111ENV USER=jupyter0 B
112/bin/sh -c usermod -g users647 B
113ENV HOME=/home/jupyter0 B
114ENV WELDER_USER=welder-user0 B
115ENV WELDER_UID=10010 B
116/bin/sh -c useradd -m -s3.92 KB
117ENV JUPYTER_PORT=80000 B
118ENV JUPYTER_HOME=/etc/jupyter0 B
119/bin/sh -c pip3 -V 32.72 MB
120/bin/sh -c git clone https://github.com/broadinstitute/cromshell.git3.29 MB
121/bin/sh -c cromshell-alpha version7.9 KB
122/bin/sh -c mkdir -p /usr/local/share/jupyter/lab183 B
123ENV PIP_USER=true0 B
124ENV PATH=/opt/conda/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/home/jupyter/.local/bin:/home/jupyter/packages/bin0 B
125COPY dir:d8ad94f5500030d870e3f9fdff4caf0048c37db581792b1763da1eec21409cdb in /etc/jupyter/scripts 2.08 KB
126COPY dir:9b66b4a13494af495bb06dfdd24c002aef593c12a259ea5765ba9edb4b4d806a in /etc/jupyter/custom 14.19 KB
127COPY file:dadf65e4c538dde5c6456ff047dfe2aac5e79a106bbd1b70aaa168d55301f370 in /etc/jupyter 888 B
128/bin/sh -c curl -o /usr/local/bin/workspace_cromwell.py3.05 KB
129/bin/sh -c chown -R $USER:users17.04 KB
130USER jupyter0 B
131EXPOSE 80000 B
132WORKDIR /home/jupyter0 B
133ENTRYPOINT ["/opt/conda/bin/jupyter" "notebook"]0 B
134USER root0 B
135COPY dir:6c87a700ad85bb13680cec5aaec9fc95325cfaaee17dfe78ffd1b6a4dbc839b7 in /etc/jupyter/scripts 572 B
136ENV TERRA_R_PLATFORM=terra-jupyter-r0 B
137ENV TERRA_R_PLATFORM_BINARY_VERSION=3.15.00 B
138/bin/sh -c cd /tmp 112.06 MB
139/bin/sh -c find $JUPYTER_HOME/scripts -name797 B
140/bin/sh -c apt-get update 310.64 MB
141ENV LIBSBML_CFLAGS=-I/usr/include0 B
142ENV LIBSBML_LIBS=-lsbml0 B
143/bin/sh -c echo 'export LIBSBML_CFLAGS="-I/usr/include"'465 B
144ENV PIP_USER=false0 B
145/bin/sh -c pip3 -V 8.23 MB
146/bin/sh -c R -e 'install.packages("BiocManager")'246.32 MB
147/bin/sh -c R -e 'BiocManager::install(c(162.73 MB
148ENV PIP_USER=true0 B
149/bin/sh -c R -e 'IRkernel::installspec(user=FALSE)'409.08 MB
150USER jupyter0 B

Command

ADD file:5d68d27cc15a80653c93d3a0b262a28112d47a46326ff5fc2dfbf7fa3b9a0ce8 in /