bcgsc/orca-hackseq:2017.10.12

Manifest digest

sha256:ebd1c9779588fcc7bbc840e5c14b2a1df5e7922e8894ed3fee8ad4424f43acce

OS/ARCH

linux/amd64

Compressed size

11.43 GB

Last pushed

over 8 years by bcgsc

Type

Image

Manifest digest

sha256:ebd1c9779588fcc7bbc840e5c14b2a1df5e7922e8894ed3fee8ad4424f43acce

Image Layers

Image Layers

1ADD file ... in / 45.41 MB

2/bin/sh -c set -xe &&850 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B

4/bin/sh -c sed -i 's/^#\s*$deb.*universe$$/\1/g'851 B

5/bin/sh -c mkdir -p /run/systemd168 B

6CMD ["/bin/bash"]0 B

7LABEL maintainer=Shaun Jackman <[email protected]>0 B

8/bin/sh -c apt-get update &&130.21 MB

9/bin/sh -c mkdir -p /usr/share/rubygems-integration/all/gems/rake-10.5.0/bin243 B

10/bin/sh -c localedef -i en_US416.83 KB

11ADD dir:91583dceb2ae51ffdc2298693995842ef684275fc3cc0faf374316a784e11e7b in /home/linuxbrew/.linuxbrew/Homebrew 2.39 MB

12/bin/sh -c mkdir /home/linuxbrew/.linuxbrew/bin &&2.39 MB

13USER [linuxbrew]0 B

14WORKDIR /home/linuxbrew0 B

15

ENV PATH=/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin SHELL=/bin/bash USER=linuxbrew

0 B

16LABEL [email protected]0 B

17ENV PERL5LIB=/home/linuxbrew/perl5/lib/perl50 B

18/bin/sh -c brew install perl155.36 MB

19/bin/sh -c brew install cpanm719.78 MB

20/bin/sh -c brew install ruby160.98 MB

21/bin/sh -c gem install gnuplot2.29 MB

22/bin/sh -c cpanm -i List::MoreUtils::XS52.6 MB

23/bin/sh -c cpanm -i Module::Build4.87 MB

24/bin/sh -c cpanm -i Unix::Processors74.87 KB

25/bin/sh -c cpanm Bio::Perl25.07 MB

26/bin/sh -c brew install python46.11 KB

27/bin/sh -c ln -s python2189 B

28/bin/sh -c brew install python354.89 MB

29/bin/sh -c brew install numpy30.57 MB

30/bin/sh -c pip2 install biopython5.23 MB

31/bin/sh -c brew install libxml218.73 MB

32/bin/sh -c pip2 install python-igraph4.71 MB

33/bin/sh -c pip2 install pysam16.26 MB

34/bin/sh -c pip2 install htseq52.1 MB

35/bin/sh -c pip2 install cwlref-runner7.59 MB

36/bin/sh -c brew install tcsh1.64 MB

37/bin/sh -c brew install homebrew/science/matplotlib27.03 MB

38/bin/sh -c brew install scipy146.83 MB

39/bin/sh -c brew install R219.74 MB

40/bin/sh -c sudo apt-get install981 B

41/bin/sh -c brew install unzip401.83 KB

42/bin/sh -c brew tap homebrew/science45.88 KB

43/bin/sh -c cpanm -i HTML::Entities809.12 KB

44/bin/sh -c cpanm -i Clone332.93 KB

45/bin/sh -c sudo apt-get install716.21 KB

46/bin/sh -c brew install miller2.2 MB

47/bin/sh -c brew install a51.93 GB

48/bin/sh -c brew install augustus215.99 MB

49/bin/sh -c brew install bam-readcount506.2 MB

50/bin/sh -c brew install canu532.62 MB

51/bin/sh -c brew install daligner188.69 MB

52/bin/sh -c brew install e-mem102.77 MB

53/bin/sh -c brew install fasta257.66 MB

54/bin/sh -c brew install gaemr304.7 KB

55/bin/sh -c brew install gatb15.13 MB

56/bin/sh -c brew install gatk36.5 MB

57/bin/sh -c brew install geneid46.42 KB

58/bin/sh -c brew install genewise46.66 KB

59/bin/sh -c brew install genometools116.3 MB

60/bin/sh -c brew install gingr18.76 MB

61/bin/sh -c brew install glimmerhmm86.01 MB

62/bin/sh -c brew install gmap-gsnap64.74 MB

63/bin/sh -c brew install gnuplot20.34 MB

64/bin/sh -c brew install grabix1.25 MB

65/bin/sh -c brew install graphlan29.65 MB

66/bin/sh -c brew install gsl46.49 KB

67/bin/sh -c brew install harfbuzz46.84 KB

68/bin/sh -c brew install hisat17.66 MB

69/bin/sh -c brew install hisat221.91 MB

70/bin/sh -c brew install hlaminer28.58 MB

71/bin/sh -c brew install hmmer46.44 KB

72/bin/sh -c brew install hmmer22.22 MB

73/bin/sh -c brew install htsbox46.4 KB

74/bin/sh -c brew install htslib46.56 KB

75/bin/sh -c brew install humann21.38 GB

76/bin/sh -c brew install icu4c174.68 MB

77/bin/sh -c brew install jellyfish-1.158.81 MB

78/bin/sh -c brew install kaiju34.7 MB

79/bin/sh -c brew install last49.9 MB

80/bin/sh -c brew install m41006.45 KB

81/bin/sh -c brew install maker653.71 MB

82/bin/sh -c brew install mhap466.49 MB

83/bin/sh -c brew install nano66.56 MB

84/bin/sh -c brew install oases348.42 KB

85/bin/sh -c brew install oma8.81 MB

86/bin/sh -c brew install orthofinder28.67 MB

87/bin/sh -c brew install paml8.23 MB

88/bin/sh -c brew install pandaseq1.27 MB

89/bin/sh -c brew install parallel46.29 KB

90/bin/sh -c brew install parsnp37.05 MB

91/bin/sh -c brew install pathd8127.83 KB

92/bin/sh -c brew install pathvisio34.05 MB

93/bin/sh -c brew install pcre46.39 KB

94/bin/sh -c brew install pear188.22 KB

95/bin/sh -c brew install phipack196.05 KB

96/bin/sh -c brew install phlawd16.64 MB

97/bin/sh -c brew install phylip9.75 MB

98/bin/sh -c brew install phyml3.25 MB

99/bin/sh -c brew install phyutility3.1 MB

100/bin/sh -c brew install picard-tools20.8 MB

101/bin/sh -c brew install piler140.41 KB

102/bin/sh -c brew install pilercr349.36 KB

103/bin/sh -c brew install pilon13.1 MB

104/bin/sh -c brew install pixman46.31 KB

105/bin/sh -c brew install plink2.81 MB

106/bin/sh -c brew install pkg-config46.33 KB

107/bin/sh -c brew install poa387.74 KB

108/bin/sh -c brew install poretools170.97 MB

109/bin/sh -c brew install prodigal46.29 KB

110/bin/sh -c brew install prokka280.11 MB

111/bin/sh -c brew install proteinortho558.74 KB

112/bin/sh -c brew install psmc311.71 KB

113/bin/sh -c brew install quast64.13 MB

114/bin/sh -c brew install quest1.45 MB

115/bin/sh -c brew install quorum1.12 MB

116/bin/sh -c brew install racon1.11 MB

117/bin/sh -c brew install rampart244.2 MB

118/bin/sh -c brew install sailfish1.04 GB

119USER [root]0 B

120/bin/sh -c echo '%orca_users ALL=(linuxbrew)553 B

121USER [linuxbrew]0 B

122/bin/sh -c Rscript -e 'install.packages(c("phytools",127.63 MB

123/bin/sh -c pip2 install http://download.pytorch.org/whl/cu80/torch-0.2.0.post3-cp27-cp27m-manylinux1_x86_64.whl508 MB

Command

ADD file:5b334adf9d9a2256add2a801b49d4b23c93b0973ec22bb798973d571c948f102 in /