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bcgsc/orca-hackseq:latest

Manifest digest

sha256:c162d83586a9f676427d065e566f689e4f63cdf2c9d2a21c4d742925d0670e16

OS/ARCH

linux/amd64

Compressed size

11.77 GB

Last pushed

almost 9 years by bcgsc

Type

Image

Manifest digest

sha256:c162d83586a9f676427d065e566f689e4f63cdf2c9d2a21c4d742925d0670e16

Image Layers

Image Layers

1ADD file ... in / 45.33 MB
2/bin/sh -c set -xe &&848 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*621 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'853 B
5/bin/sh -c mkdir -p /run/systemd169 B
6CMD ["/bin/bash"]0 B
7LABEL maintainer=Shaun Jackman <[email protected]>0 B
8/bin/sh -c apt-get update &&130.21 MB
9/bin/sh -c mkdir -p /usr/share/rubygems-integration/all/gems/rake-10.5.0/bin242 B
10/bin/sh -c localedef -i en_US416.83 KB
11ADD dir:e16e4d7c2468696b175389c35b0d9b81dd2576913c525ef60e9554b6254492a9 in /home/linuxbrew/.linuxbrew/Homebrew 2.38 MB
12/bin/sh -c mkdir /home/linuxbrew/.linuxbrew/bin &&2.38 MB
13USER [linuxbrew]0 B
14WORKDIR /home/linuxbrew0 B
15ENV PATH=/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin SHELL=/bin/bash USER=linuxbrew0 B
16LABEL [email protected]0 B
17ENV PERL5LIB=/home/linuxbrew/perl5/lib/perl50 B
18/bin/sh -c brew install perl155.12 MB
19/bin/sh -c brew install cpanm451.04 MB
20/bin/sh -c brew install ruby33.65 MB
21/bin/sh -c gem install gnuplot2.29 MB
22/bin/sh -c cpanm -i List::MoreUtils::XS52.5 MB
23/bin/sh -c cpanm -i Module::Build4.86 MB
24/bin/sh -c cpanm -i Unix::Processors74.72 KB
25/bin/sh -c cpanm Bio::Perl25.07 MB
26/bin/sh -c brew install python46.35 KB
27/bin/sh -c ln -s python2189 B
28/bin/sh -c brew install python354.69 MB
29/bin/sh -c brew install numpy30.62 MB
30/bin/sh -c pip2 install biopython5.23 MB
31/bin/sh -c brew install libxml211.85 MB
32/bin/sh -c pip2 install python-igraph4.71 MB
33/bin/sh -c pip2 install pysam16.26 MB
34/bin/sh -c pip2 install htseq52.1 MB
35/bin/sh -c pip2 install cwlref-runner7.27 MB
36/bin/sh -c brew install tcsh1.64 MB
37/bin/sh -c brew install homebrew/science/matplotlib27.03 MB
38/bin/sh -c brew install scipy146.83 MB
39/bin/sh -c brew install R219.63 MB
40/bin/sh -c sudo apt-get install981 B
41/bin/sh -c brew install unzip402.13 KB
42/bin/sh -c brew tap homebrew/science46.27 KB
43/bin/sh -c cpanm -i HTML::Entities809.16 KB
44/bin/sh -c cpanm -i Clone332.27 KB
45/bin/sh -c sudo apt-get install715.97 KB
46/bin/sh -c brew install miller2.2 MB
47/bin/sh -c brew install a52.04 GB
48/bin/sh -c brew install augustus215.99 MB
49/bin/sh -c brew install bam-readcount467.19 MB
50/bin/sh -c brew install canu532.62 MB
51/bin/sh -c brew install daligner188.69 MB
52/bin/sh -c brew install e-mem102.77 MB
53/bin/sh -c brew install fasta257.66 MB
54/bin/sh -c brew install gaemr351.11 KB
55/bin/sh -c brew install gatb15.14 MB
56/bin/sh -c brew install gatk36.51 MB
57/bin/sh -c brew install geneid48.29 KB
58/bin/sh -c brew install genewise48.53 KB
59/bin/sh -c brew install genometools118.48 MB
60/bin/sh -c brew install gingr18.76 MB
61/bin/sh -c brew install glimmerhmm86.02 MB
62/bin/sh -c brew install gmap-gsnap64.75 MB
63/bin/sh -c brew install gnuplot20.34 MB
64/bin/sh -c brew install grabix1.25 MB
65/bin/sh -c brew install graphlan31.62 MB
66/bin/sh -c brew install gsl48.48 KB
67/bin/sh -c brew install harfbuzz48.82 KB
68/bin/sh -c brew install hisat17.66 MB
69/bin/sh -c brew install hisat221.91 MB
70/bin/sh -c brew install hlaminer28.58 MB
71/bin/sh -c brew install hmmer48.44 KB
72/bin/sh -c brew install hmmer22.22 MB
73/bin/sh -c brew install htsbox48.52 KB
74/bin/sh -c brew install htslib48.66 KB
75/bin/sh -c brew install humann21.38 GB
76/bin/sh -c brew install icu4c48.67 KB
77/bin/sh -c brew install idba4.29 MB
78/bin/sh -c brew install igv54.72 MB
79/bin/sh -c brew install igvtools31.38 MB
80/bin/sh -c brew install impute22.93 MB
81/bin/sh -c brew install infernal16.36 MB
82/bin/sh -c brew install iqtree6.38 MB
83/bin/sh -c brew install iva58.91 MB
84/bin/sh -c brew install jellyfish-1.13.36 MB
85/bin/sh -c brew install jellyfish48.73 KB
86/bin/sh -c brew install jpeg48.75 KB
87/bin/sh -c brew install kaiju675.35 MB
88/bin/sh -c brew install last50 MB
89/bin/sh -c brew install m41.42 MB
90/bin/sh -c brew install maker655.69 MB
91/bin/sh -c brew install mhap478.07 MB
92/bin/sh -c brew install nano66.56 MB
93/bin/sh -c brew install oases350.62 KB
94/bin/sh -c brew install oma8.81 MB
95/bin/sh -c brew install orthofinder28.67 MB
96/bin/sh -c brew install paml10.89 MB
97/bin/sh -c brew install pandaseq1.27 MB
98/bin/sh -c brew install parallel48.79 KB
99/bin/sh -c brew install parsnp37.05 MB
100/bin/sh -c brew install pathd8130.44 KB
101/bin/sh -c brew install pathvisio34.05 MB
102/bin/sh -c brew install pcre48.96 KB
103/bin/sh -c brew install pear190.86 KB
104/bin/sh -c brew install phipack198.68 KB
105/bin/sh -c brew install phlawd16.64 MB
106/bin/sh -c brew install phylip9.76 MB
107/bin/sh -c brew install phyml3.25 MB
108/bin/sh -c brew install phyutility3.53 MB
109/bin/sh -c brew install picard-tools20.81 MB
110/bin/sh -c brew install piler143.18 KB
111/bin/sh -c brew install pilercr352.14 KB
112/bin/sh -c brew install pilon13.11 MB
113/bin/sh -c brew install pixman49.03 KB
114/bin/sh -c brew install plink2.82 MB
115/bin/sh -c brew install pkg-config49.07 KB
116/bin/sh -c brew install poa390.58 KB
117/bin/sh -c brew install poretools201.53 MB
118/bin/sh -c brew install prodigal49.08 KB
119/bin/sh -c brew install prokka280.11 MB
120/bin/sh -c brew install proteinortho561.61 KB
121/bin/sh -c brew install psmc314.29 KB
122/bin/sh -c brew install quast64.13 MB
123/bin/sh -c brew install quest1.45 MB
124/bin/sh -c brew install quorum1.13 MB
125/bin/sh -c brew install racon1.11 MB
126/bin/sh -c brew install rampart244.05 MB
127/bin/sh -c brew install sailfish1.08 GB
128/bin/sh -c Rscript -e 'install.packages(c("phytools",118.24 MB
129/bin/sh -c pip2 install http://download.pytorch.org/whl/cu80/torch-0.2.0.post3-cp27-cp27m-manylinux1_x86_64.whl507.95 MB

Command

ADD file:5ed435208da6621b45db657dd6549ee132cde58c4b6763920030794c2f31fbc0 in /