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bgruening/galaxy-rna-workbench:17.01

Manifest digest

sha256:3d48d33b5bd93914bdd1d0fb8771e0dac073855b1c2c7a83c1541be560af5b7c

OS/ARCH

linux/amd64

Compressed size

4.32 GB

Last pushed

over 9 years by bgruening

Type

Image

Manifest digest

sha256:3d48d33b5bd93914bdd1d0fb8771e0dac073855b1c2c7a83c1541be560af5b7c

Image Layers

Image Layers

1ADD file ... in / 62.65 MB
2/bin/sh -c set -xe &&69.88 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*357 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'680 B
5/bin/sh -c mkdir -p /run/systemd162 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update180.58 MB
10MAINTAINER Björn A. Grüning,0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=release_17.01 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.ini GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&329.72 KB
16/bin/sh -c groupadd -r postgres2.03 KB
17/bin/sh -c apt-get -qq update180.18 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.55 KB
19ADD file ... in /home/galaxy/.bashrc 1.71 KB
20/bin/sh -c mkdir $GALAXY_ROOT &&27.64 MB
21/bin/sh -c su $GALAXY_USER -c21.13 KB
22ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
23ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 439 B
24ADD dir:e2b5c03384775a7c9facc4a1d7c843b31a4a82d8776c2eabec579ae058691ff2 in /ansible/roles 38.44 KB
25ADD file ... in /ansible/provision.yml 220 B
26ADD file ... in /ansible/postgresql_provision.yml 346 B
27/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&68.45 MB
28/bin/sh -c mkdir /shed_tools &&184 B
29USER [galaxy]0 B
30WORKDIR /galaxy-central0 B
31ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F30 B
32/bin/sh -c ./scripts/common_startup.sh && 86.96 MB
33ADD file ... in /etc/galaxy/web/welcome_image.png 49.5 KB
34ADD file ... in /etc/galaxy/web/welcome.html 1.06 KB
35USER [root]0 B
36ADD file ... in /usr/local/bin/setup_postgresql.py 1.28 KB
37/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.11 MB
38ADD file ... in /home/galaxy/tool_sheds_conf.xml 348 B
39ADD file ... in /usr/bin/add-tool-shed 572 B
40ADD file ... in /usr/bin/startup_lite 786 B
41ADD file ... in /usr/bin/install-tools 904 B
42ADD file ... in /usr/bin/install-biojs 338 B
43/bin/sh -c chmod +x /usr/bin/install-tools1.95 KB
44/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >228 B
45ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
46EXPOSE 21/tcp0 B
47EXPOSE 80/tcp0 B
48EXPOSE 443/tcp0 B
49EXPOSE 8800/tcp0 B
50EXPOSE 9002/tcp0 B
51ADD file ... in /usr/bin/install_db.sh 267 B
52/bin/sh -c chmod +x /usr/bin/install_db.sh265 B
53CMD ["/usr/bin/startup"]0 B
54MAINTAINER Björn A. Grüning,0 B
55ENV GALAXY_CONFIG_BRAND=NGS-preprocessing0 B
56ENV ENABLE_TTS_INSTALL=True0 B
57ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=True GALAXY_CONFIG_CONDA_AUTO_INIT=True0 B
58ADD file ... in /galaxy-central/tools.yaml 1.25 KB
59/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&976.89 MB
60MAINTAINER Björn A. Grüning,0 B
61ENV GALAXY_CONFIG_BRAND=RNA-Seq GALAXY_CONFIG_CONDA_AUTO_INSTALL=True GALAXY_CONFIG_CONDA_AUTO_INIT=True0 B
62ADD file ... in /galaxy-central/tools.yaml 1.26 KB
63/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.05 GB
64MAINTAINER Björn A. Grüning,0 B
65ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=True GALAXY_CONFIG_CONDA_AUTO_INIT=True GALAXY_CONFIG_USE_CACHED_DEPENDENCY_MANAGER=True0 B
66ADD file ... in /galaxy-central/tools.yaml 1.52 KB
67/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.7 GB
68ADD file ... in /galaxy-central/config/plugins/tours/rnateam.viennarna.yaml 4.51 KB
69ADD file ... in /galaxy-central/config/plugins/tours/rnateam.rnaseq.yaml 12.59 KB
70ADD file ... in /galaxy-central/setup_data_libraries.py 1.24 KB
71ADD file ... in /galaxy-central/library_data.yaml 341 B
72ADD file ... in /home/galaxy/rnateam.workflow.trimming_mapping.ga 4.2 KB
73ADD file ... in /galaxy-central/import_workflows.py 457 B
74/bin/sh -c startup_lite && 9.49 MB
75/bin/sh -c curl -sL https://github.com/bgruening/galaxytools/archive/master.tar.gz3.78 KB
76ADD file ... in /etc/galaxy/web/welcome_image.png 83.86 KB
77ADD file ... in /etc/galaxy/web/welcome.html 1.07 KB

Command

ADD file:a642bdc2d8d6e4484e4419fc938e24b03454e36f389233f2ce77fc04722da900 in /