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bgruening/galaxy-rna-workbench:18.01

Manifest digest

sha256:5bdcddd7fd11030495543048415e013ccc0553a417d7ce7a50933673ff32c847

OS/ARCH

linux/amd64

Compressed size

5.93 GB

Last pushed

over 8 years by bgruening

Type

Image

Manifest digest

sha256:5bdcddd7fd11030495543048415e013ccc0553a417d7ce7a50933673ff32c847

Image Layers

Image Layers

1ADD file ... in / 69.62 MB
2/bin/sh -c set -xe &&70.96 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*630 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'851 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update187.73 MB
10MAINTAINER Björn A. Grüning,0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=release_18.01 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.yml GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&831.21 KB
16/bin/sh -c groupadd -r postgres2.07 KB
17/bin/sh -c echo "force-unsafe-io" >170.03 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.68 KB
19ADD file ... in /home/galaxy/.bashrc 1.7 KB
20/bin/sh -c mkdir $GALAXY_ROOT &&33.62 MB
21/bin/sh -c su $GALAXY_USER -c23.16 KB
22ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
23ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 462 B
24ADD dir:ba6f80ba0cb040e9c15b5ee65ea02b6bf4fe5a79fe131ff54a1ebfeeeb09562d in /ansible/roles 47.14 KB
25ADD file ... in /ansible/provision.yml 222 B
26ADD file ... in /ansible/postgresql_provision.yml 351 B
27/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&338.49 MB
28/bin/sh -c mkdir /shed_tools &&238 B
29USER [galaxy]0 B
30WORKDIR /galaxy-central0 B
31ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F30 B
32ADD file ... in /etc/galaxy/web/welcome_image.png 49.55 KB
33ADD file ... in /etc/galaxy/web/welcome.html 1.07 KB
34/bin/sh -c ./scripts/common_startup.sh && 153.9 MB
35/bin/sh -c /tool_deps/_conda/bin/conda create -y57.23 MB
36USER [root]0 B
37ADD file ... in /usr/local/bin/setup_postgresql.py 1.29 KB
38/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.12 MB
39ADD file ... in /home/galaxy/tool_sheds_conf.xml 356 B
40ADD file ... in /usr/bin/install-tools 771 B
41ADD file ... in /usr/bin/install-biojs 344 B
42/bin/sh -c chmod +x /usr/bin/install-tools924 B
43/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >230 B
44ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
45EXPOSE 21/tcp0 B
46EXPOSE 80/tcp0 B
47EXPOSE 443/tcp0 B
48EXPOSE 8800/tcp0 B
49EXPOSE 9002/tcp0 B
50VOLUME [/export/ /data/ /var/lib/docker]0 B
51ADD file ... in /usr/bin/install_db.sh 269 B
52/bin/sh -c chmod +x /usr/bin/install_db.sh373 B
53CMD ["/usr/bin/startup"]0 B
54MAINTAINER Björn A. Grüning,0 B
55ENV GALAXY_CONFIG_BRAND=NGS-preprocessing0 B
56COPY file:e5f0aa3ed1209bc5d53aaba1ff6763c6cb09963554524a30c9119312ef385918 in /galaxy-central/tools.yaml 1.31 KB
57/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.36 GB
58MAINTAINER Björn A. Grüning,0 B
59ENV GALAXY_CONFIG_BRAND=RNA-Seq0 B
60ADD file ... in /galaxy-central/tools.yaml 1.3 KB
61/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.12 GB
62MAINTAINER Björn A. Grüning,0 B
63ENV GALAXY_CONFIG_BRAND=RNA structural analysis0 B
64ADD file ... in /galaxy-central/tools.yaml 430 B
65/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&780.94 MB
66MAINTAINER Björn A. Grüning,0 B
67ENV GALAXY_CONFIG_BRAND=RNA workbench0 B
68ADD file ... in /galaxy-central/tools.yaml 1.39 KB
69ADD file ... in /galaxy-central/tools_2.yaml 1.25 KB
70/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&925.82 MB
71/bin/sh -c install-tools $GALAXY_ROOT/tools_2.yaml &&804.07 MB
72ADD multi:76d4c23aa4162168332b5e1a4bd190046d3151693fa43ab4e0b90494d54b3da4 in /galaxy-central/config/plugins/tours/ 15.55 KB
73ADD file ... in /galaxy-central/library_data.yaml 462 B
74ADD multi:eef80e30bc02d726aba3b76fd6ea2e714df3460b95efe2dde915d85e868dd373 in /home/galaxy/workflows/ 9.98 KB
75ENV GALAXY_CONFIG_TOOL_PATH=/galaxy-central/tools/0 B
76/bin/sh -c curl -sL https://github.com/bgruening/galaxytools/archive/master.tar.gz3.8 KB
77ADD file ... in /etc/galaxy/web/welcome_image.png 74.22 KB
78ADD file ... in /etc/galaxy/web/welcome.html 1.06 KB

Command

ADD file:3900b83a46e97708aef19ab39e8e6d44b2a8443b193bdbed6f9b6bd722ef9f7f in /