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bgruening/galaxy-rna-workbench:index_readme

Manifest digest

sha256:18a346239b1f96be3ebd806e1c763f89c566380781ed6bdcad85265fc5998a77

OS/ARCH

linux/amd64

Compressed size

4.76 GB

Last pushed

over 9 years by bgruening

Type

Image

Manifest digest

sha256:18a346239b1f96be3ebd806e1c763f89c566380781ed6bdcad85265fc5998a77

Image Layers

Image Layers

1ADD file ... in / 62.65 MB
2/bin/sh -c set -xe &&70.92 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*357 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'674 B
5/bin/sh -c mkdir -p /run/systemd163 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update180.58 MB
10MAINTAINER Björn A. Grüning,0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=release_17.01 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.ini GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&408.82 KB
16/bin/sh -c groupadd -r postgres2.05 KB
17/bin/sh -c apt-get -qq update203.77 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.58 KB
19ADD file ... in /home/galaxy/.bashrc 1.7 KB
20/bin/sh -c mkdir $GALAXY_ROOT &&27.82 MB
21/bin/sh -c su $GALAXY_USER -c21.27 KB
22ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
23ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 434 B
24ADD dir:e2b5c03384775a7c9facc4a1d7c843b31a4a82d8776c2eabec579ae058691ff2 in /ansible/roles 38.52 KB
25ADD file ... in /ansible/provision.yml 219 B
26ADD file ... in /ansible/postgresql_provision.yml 350 B
27/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&69.05 MB
28/bin/sh -c mkdir /shed_tools &&182 B
29USER [galaxy]0 B
30WORKDIR /galaxy-central0 B
31ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F30 B
32/bin/sh -c ./scripts/common_startup.sh && 87.83 MB
33ADD file ... in /etc/galaxy/web/welcome_image.png 49.55 KB
34ADD file ... in /etc/galaxy/web/welcome.html 1.06 KB
35USER [root]0 B
36ADD file ... in /usr/local/bin/setup_postgresql.py 1.28 KB
37/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.17 MB
38ADD file ... in /home/galaxy/tool_sheds_conf.xml 353 B
39ADD file ... in /usr/bin/add-tool-shed 576 B
40ADD file ... in /usr/bin/startup_lite 794 B
41ADD file ... in /usr/bin/install-tools 906 B
42ADD file ... in /usr/bin/install-biojs 341 B
43/bin/sh -c chmod +x /usr/bin/install-tools1.95 KB
44/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >229 B
45ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
46EXPOSE 21/tcp0 B
47EXPOSE 80/tcp0 B
48EXPOSE 443/tcp0 B
49EXPOSE 8800/tcp0 B
50EXPOSE 9002/tcp0 B
51ADD file ... in /usr/bin/install_db.sh 265 B
52/bin/sh -c chmod +x /usr/bin/install_db.sh263 B
53CMD ["/usr/bin/startup"]0 B
54MAINTAINER Björn A. Grüning,0 B
55ENV GALAXY_CONFIG_BRAND=NGS-preprocessing0 B
56ENV ENABLE_TTS_INSTALL=True0 B
57ENV GALAXY_CONFIG_CONDA_AUTO_INSTALL=True GALAXY_CONFIG_CONDA_AUTO_INIT=True0 B
58ADD file ... in /galaxy-central/tools.yaml 1.31 KB
59/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&1.15 GB
60MAINTAINER Björn A. Grüning,0 B
61ENV GALAXY_CONFIG_BRAND=RNA-Seq GALAXY_CONFIG_CONDA_AUTO_INSTALL=True GALAXY_CONFIG_CONDA_AUTO_INIT=True0 B
62ADD file ... in /galaxy-central/tools.yaml 1.25 KB
63/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&923.74 MB
64MAINTAINER Björn A. Grüning,0 B
65ENV GALAXY_CONFIG_BRAND=RNA structural analysis0 B
66ADD file ... in /galaxy-central/tools.yaml 371 B
67/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&313.59 MB
68MAINTAINER Björn A. Grüning,0 B
69ENV GALAXY_CONFIG_BRAND=RNA workbench0 B
70ADD file ... in /galaxy-central/tools.yaml 1.15 KB
71ADD file ... in /galaxy-central/tools_2.yaml 1.41 KB
72/bin/sh -c install-tools $GALAXY_ROOT/tools.yaml &&454.61 MB
73/bin/sh -c install-tools $GALAXY_ROOT/tools_2.yaml &&1.32 GB
74ADD multi:2e3c9f61d0a4b4dc3e39cb4ebf91d8423efc35c8bc7edadba2797b665a963dea in /galaxy-central/config/plugins/tours/ 15.61 KB
75ADD file ... in /galaxy-central/library_data.yaml 463 B
76ADD multi:8dc0e18625f7ab919b788cb14d55b7107ea1cc8767d462acc3a0c520b0c77447 in /home/galaxy/workflows/ 13.86 KB
77ADD file ... in /galaxy-central/setup_data_libraries.py 1.19 KB
78/bin/sh -c startup_lite && 10.18 MB
79/bin/sh -c curl -sL https://github.com/bgruening/galaxytools/archive/master.tar.gz3.81 KB
80ADD file ... in /etc/galaxy/web/welcome_image.png 74.22 KB
81ADD file ... in /etc/galaxy/web/welcome.html 1.06 KB

Command

ADD file:a642bdc2d8d6e4484e4419fc938e24b03454e36f389233f2ce77fc04722da900 in /