Sign inSign up

bioconductor/ml-verse:RELEASE_3_18

Index digest

sha256:6a93b434bbb4ad8e5c67ca6eb657f47552ab6e40fd35431cbe0a81b39fce2655

OS/ARCH

linux/amd64

Compressed size

6.77 GB

Last pushed

over 2 years by biocdockerbot

Type

Image

Manifest digest

sha256:e7db241fb43fa0febd1a08e9b979bec95fe24b8a094457ab241e9409daaf31be

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.17 MB
6CMD ["/bin/bash"]0 B
7ENV NVARCH=x86_640 B
8ENV NVIDIA_REQUIRE_CUDA=cuda>=11.8 brand=tesla,driver>=470,driver<471 brand=unknown,driver>=470,driver<471 brand=nvidia,driver>=470,driver<4710 B
9ENV NV_CUDA_CUDART_VERSION=11.8.89-10 B
10ENV NV_CUDA_COMPAT_PACKAGE=cuda-compat-11-80 B
11ARG TARGETARCH0 B
12LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
13RUN |1 TARGETARCH=amd64 /bin/sh -c4.41 MB
14ENV CUDA_VERSION=11.8.00 B
15RUN |1 TARGETARCH=amd64 /bin/sh -c53.62 MB
16RUN |1 TARGETARCH=amd64 /bin/sh -c188 B
17ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
18ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B
19COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB
20ENV NVIDIA_VISIBLE_DEVICES=all0 B
21ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B
22ENV NV_CUDA_LIB_VERSION=11.8.0-10 B
23ENV NV_NVTX_VERSION=11.8.86-10 B
24ENV NV_LIBNPP_VERSION=11.8.0.86-10 B
25ENV NV_LIBNPP_PACKAGE=libnpp-11-8=11.8.0.86-10 B
26ENV NV_LIBCUSPARSE_VERSION=11.7.5.86-10 B
27ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-11-80 B
28ENV NV_LIBCUBLAS_VERSION=11.11.3.6-10 B
29ENV NV_LIBCUBLAS_PACKAGE=libcublas-11-8=11.11.3.6-10 B
30ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B
31ENV NV_LIBNCCL_PACKAGE_VERSION=2.15.5-10 B
32ENV NCCL_VERSION=2.15.5-10 B
33ENV NV_LIBNCCL_PACKAGE=libnccl2=2.15.5-1+cuda11.80 B
34ARG TARGETARCH0 B
35LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
36RUN |1 TARGETARCH=amd64 /bin/sh -c1.28 GB
37RUN |1 TARGETARCH=amd64 /bin/sh -c62.2 KB
38COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.65 KB
39COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB
40ENV NVIDIA_PRODUCT_NAME=CUDA0 B
41ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B
42ENV NV_CUDA_LIB_VERSION=11.8.0-10 B
43ENV NV_CUDA_CUDART_DEV_VERSION=11.8.89-10 B
44ENV NV_NVML_DEV_VERSION=11.8.86-10 B
45ENV NV_LIBCUSPARSE_DEV_VERSION=11.7.5.86-10 B
46ENV NV_LIBNPP_DEV_VERSION=11.8.0.86-10 B
47ENV NV_LIBNPP_DEV_PACKAGE=libnpp-dev-11-8=11.8.0.86-10 B
48ENV NV_LIBCUBLAS_DEV_VERSION=11.11.3.6-10 B
49ENV NV_LIBCUBLAS_DEV_PACKAGE_NAME=libcublas-dev-11-80 B
50ENV NV_LIBCUBLAS_DEV_PACKAGE=libcublas-dev-11-8=11.11.3.6-10 B
51ENV NV_CUDA_NSIGHT_COMPUTE_VERSION=11.8.0-10 B
52ENV NV_CUDA_NSIGHT_COMPUTE_DEV_PACKAGE=cuda-nsight-compute-11-8=11.8.0-10 B
53ENV NV_NVPROF_VERSION=11.8.87-10 B
54ENV NV_NVPROF_DEV_PACKAGE=cuda-nvprof-11-8=11.8.87-10 B
55ENV NV_LIBNCCL_DEV_PACKAGE_NAME=libnccl-dev0 B
56ENV NV_LIBNCCL_DEV_PACKAGE_VERSION=2.15.5-10 B
57ENV NCCL_VERSION=2.15.5-10 B
58ENV NV_LIBNCCL_DEV_PACKAGE=libnccl-dev=2.15.5-1+cuda11.80 B
59ARG TARGETARCH0 B
60LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
61RUN |1 TARGETARCH=amd64 /bin/sh -c2.29 GB
62RUN |1 TARGETARCH=amd64 /bin/sh -c86.16 KB
63ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B
64ENV NV_CUDNN_VERSION=8.9.6.500 B
65ENV NV_CUDNN_PACKAGE_NAME=libcudnn80 B
66ENV NV_CUDNN_PACKAGE=libcudnn8=8.9.6.50-1+cuda11.80 B
67ENV NV_CUDNN_PACKAGE_DEV=libcudnn8-dev=8.9.6.50-1+cuda11.80 B
68ARG TARGETARCH0 B
69LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
70LABEL com.nvidia.cudnn.version=8.9.6.500 B
71RUN |1 TARGETARCH=amd64 /bin/sh -c1.34 GB
72ENV R_VERSION=4.3.30 B
73ENV R_HOME=/usr/local/lib/R0 B
74ENV TZ=Etc/UTC0 B
75COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.81 KB
76RUN /bin/sh -c /rocker_scripts/install_R_source.sh #183.07 MB
77ENV CRAN=https://p3m.dev/cran/__linux__/jammy/2024-04-230 B
78ENV LANG=en_US.UTF-80 B
79COPY scripts/bin/ /rocker_scripts/bin/ # buildkit2.76 KB
80COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh # buildkit1.5 KB
81RUN /bin/sh -c /rocker_scripts/setup_R.sh #26.32 MB
82CMD ["R"]0 B
83ENV NVBLAS_CONFIG_FILE=/etc/nvblas.conf0 B
84COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh # buildkit1.07 KB
85RUN /bin/sh -c /rocker_scripts/config_R_cuda.sh #542 B
86ENV PYTHON_CONFIGURE_OPTS=--enable-shared0 B
87ENV RETICULATE_AUTOCONFIGURE=00 B
88ENV PURGE_BUILDDEPS=false0 B
89ENV VIRTUAL_ENV=/opt/venv0 B
90ENV PATH=/opt/venv/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin0 B
91COPY scripts/install_python.sh /rocker_scripts/install_python.sh # buildkit1.26 KB
92RUN /bin/sh -c /rocker_scripts/install_python.sh #39.26 MB
93COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh # buildkit892 B
94RUN /bin/sh -c /rocker_scripts/install_tidyverse.sh #180.14 MB
95ENV S6_VERSION=v2.1.0.20 B
96ENV RSTUDIO_VERSION=2023.12.1+4020 B
97ENV DEFAULT_USER=rstudio0 B
98COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh # buildkit1.89 KB
99COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh # buildkit750 B
100COPY scripts/default_user.sh /rocker_scripts/default_user.sh # buildkit717 B
101COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh # buildkit522 B
102COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh # buildkit3.33 KB
103COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh # buildkit347 B
104RUN /bin/sh -c /rocker_scripts/install_rstudio.sh #292.25 MB
105EXPOSE map[8787/tcp:{}]0 B
106CMD ["/init"]0 B
107COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh # buildkit1.25 KB
108RUN /bin/sh -c /rocker_scripts/install_pandoc.sh #27.36 KB
109COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh # buildkit1.06 KB
110RUN /bin/sh -c /rocker_scripts/install_quarto.sh #56.36 KB
111COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh # buildkit1.28 KB
112COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh # buildkit1.31 KB
113RUN /bin/sh -c /rocker_scripts/install_verse.sh #443.83 MB
114COPY scripts/install_geospatial.sh /rocker_scripts/install_geospatial.sh # buildkit1.04 KB
115RUN /bin/sh -c /rocker_scripts/install_geospatial.sh #326.71 MB
116COPY scripts /rocker_scripts # buildkit9.9 KB
117ENV BIOCONDUCTOR_USE_CONTAINER_REPOSITORY=TRUE0 B
118ARG TARGETARCH0 B
119ENV TARGETARCH=amd640 B
120COPY / / # buildkit326.43 MB
121LABEL name=bioconductor/bioconductor_docker version= url=https://github.com/Bioconductor/bioconductor_docker vendor=Bioconductor0 B
122ARG BIOCONDUCTOR_VERSION=3.180 B
123ARG BIOCONDUCTOR_PATCH=290 B
124ARG BIOCONDUCTOR_DOCKER_VERSION=3.18.290 B
125ARG TARGETPLATFORM0 B
126ENV TARGETPLATFORM=linux/amd640 B
127ENV PLATFORM=linux/amd640 B
128ENV LIBSBML_CFLAGS=-I/usr/include0 B
129ENV LIBSBML_LIBS=-lsbml0 B
130ENV BIOCONDUCTOR_DOCKER_VERSION=3.18.290 B
131ENV BIOCONDUCTOR_VERSION=3.180 B
132ENV BIOCONDUCTOR_NAME=bioconductor_docker0 B
133CMD ["/init"]0 B

Command

 ARG RELEASE