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bioconductor/ml-verse:RELEASE_3_20-R-4.4.2

Index digest

sha256:760464b15dc44e620a884ca9a64c7c4cbf6ff65828a4f823c214b15dfd1238d2

OS/ARCH

linux/amd64

Compressed size

6.3 GB

Last pushed

over 1 year by biocdockerbot

Type

Image

Manifest digest

sha256:c4ddc49ab1e734d9f9541316197cc59ce87b7d45eeceb11e26868bc5e8d09852

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=24.040 B
5ADD file ... in / 28.37 MB
6CMD ["/bin/bash"]0 B
7ENV NVARCH=x86_640 B
8ENV NVIDIA_REQUIRE_CUDA=cuda>=12.6 brand=unknown,driver>=470,driver<471 brand=grid,driver>=470,driver<471 brand=tesla,driver>=470,driver<4710 B
9ENV NV_CUDA_CUDART_VERSION=12.6.77-10 B
10ARG TARGETARCH0 B
11LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
12RUN |1 TARGETARCH=amd64 /bin/sh -c4.33 MB
13ENV CUDA_VERSION=12.6.20 B
14RUN |1 TARGETARCH=amd64 /bin/sh -c54.66 MB
15RUN |1 TARGETARCH=amd64 /bin/sh -c184 B
16ENV PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
17ENV LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib640 B
18COPY NGC-DL-CONTAINER-LICENSE / # buildkit6.72 KB
19ENV NVIDIA_VISIBLE_DEVICES=all0 B
20ENV NVIDIA_DRIVER_CAPABILITIES=compute,utility0 B
21ENV NV_CUDA_LIB_VERSION=12.6.2-10 B
22ENV NV_NVTX_VERSION=12.6.77-10 B
23ENV NV_LIBNPP_VERSION=12.3.1.54-10 B
24ENV NV_LIBNPP_PACKAGE=libnpp-12-6=12.3.1.54-10 B
25ENV NV_LIBCUSPARSE_VERSION=12.5.4.2-10 B
26ENV NV_LIBCUBLAS_PACKAGE_NAME=libcublas-12-60 B
27ENV NV_LIBCUBLAS_VERSION=12.6.3.3-10 B
28ENV NV_LIBCUBLAS_PACKAGE=libcublas-12-6=12.6.3.3-10 B
29ENV NV_LIBNCCL_PACKAGE_NAME=libnccl20 B
30ENV NV_LIBNCCL_PACKAGE_VERSION=2.23.4-10 B
31ENV NCCL_VERSION=2.23.4-10 B
32ENV NV_LIBNCCL_PACKAGE=libnccl2=2.23.4-1+cuda12.60 B
33ARG TARGETARCH0 B
34LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
35RUN |1 TARGETARCH=amd64 /bin/sh -c1.34 GB
36RUN |1 TARGETARCH=amd64 /bin/sh -c57.94 KB
37COPY entrypoint.d/ /opt/nvidia/entrypoint.d/ # buildkit1.64 KB
38COPY nvidia_entrypoint.sh /opt/nvidia/ # buildkit1.49 KB
39ENV NVIDIA_PRODUCT_NAME=CUDA0 B
40ENTRYPOINT ["/opt/nvidia/nvidia_entrypoint.sh"]0 B
41ENV NV_CUDA_LIB_VERSION=12.6.2-10 B
42ENV NV_CUDA_CUDART_DEV_VERSION=12.6.77-10 B
43ENV NV_NVML_DEV_VERSION=12.6.77-10 B
44ENV NV_LIBCUSPARSE_DEV_VERSION=12.5.4.2-10 B
45ENV NV_LIBNPP_DEV_VERSION=12.3.1.54-10 B
46ENV NV_LIBNPP_DEV_PACKAGE=libnpp-dev-12-6=12.3.1.54-10 B
47ENV NV_LIBCUBLAS_DEV_VERSION=12.6.3.3-10 B
48ENV NV_LIBCUBLAS_DEV_PACKAGE_NAME=libcublas-dev-12-60 B
49ENV NV_LIBCUBLAS_DEV_PACKAGE=libcublas-dev-12-6=12.6.3.3-10 B
50ENV NV_CUDA_NSIGHT_COMPUTE_VERSION=12.6.2-10 B
51ENV NV_CUDA_NSIGHT_COMPUTE_DEV_PACKAGE=cuda-nsight-compute-12-6=12.6.2-10 B
52ENV NV_NVPROF_VERSION=12.6.80-10 B
53ENV NV_NVPROF_DEV_PACKAGE=cuda-nvprof-12-6=12.6.80-10 B
54ENV NV_LIBNCCL_DEV_PACKAGE_NAME=libnccl-dev0 B
55ENV NV_LIBNCCL_DEV_PACKAGE_VERSION=2.23.4-10 B
56ENV NCCL_VERSION=2.23.4-10 B
57ENV NV_LIBNCCL_DEV_PACKAGE=libnccl-dev=2.23.4-1+cuda12.60 B
58ARG TARGETARCH0 B
59LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
60RUN |1 TARGETARCH=amd64 /bin/sh -c2.38 GB
61RUN |1 TARGETARCH=amd64 /bin/sh -c87.1 KB
62ENV LIBRARY_PATH=/usr/local/cuda/lib64/stubs0 B
63ENV NV_CUDNN_VERSION=9.5.0.50-10 B
64ENV NV_CUDNN_PACKAGE_NAME=libcudnn9-cuda-120 B
65ENV NV_CUDNN_PACKAGE=libcudnn9-cuda-12=9.5.0.50-10 B
66ENV NV_CUDNN_PACKAGE_DEV=libcudnn9-dev-cuda-12=9.5.0.50-10 B
67ARG TARGETARCH0 B
68LABEL maintainer=NVIDIA CORPORATION <[email protected]>0 B
69LABEL com.nvidia.cudnn.version=9.5.0.50-10 B
70RUN |1 TARGETARCH=amd64 /bin/sh -c541.63 MB
71ENV R_VERSION=4.4.20 B
72ENV R_HOME=/usr/local/lib/R0 B
73ENV TZ=Etc/UTC0 B
74COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.81 KB
75RUN /bin/sh -c /rocker_scripts/install_R_source.sh #269.53 MB
76ENV CRAN=https://p3m.dev/cran/__linux__/noble/latest0 B
77ENV LANG=en_US.UTF-80 B
78COPY scripts/bin/ /rocker_scripts/bin/ # buildkit2.76 KB
79COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh # buildkit1.5 KB
80RUN /bin/sh -c if grep27.19 MB
81CMD ["R"]0 B
82ENV NVBLAS_CONFIG_FILE=/etc/nvblas.conf0 B
83COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh # buildkit1.08 KB
84RUN /bin/sh -c /rocker_scripts/config_R_cuda.sh #540 B
85ENV PYTHON_CONFIGURE_OPTS=--enable-shared0 B
86ENV RETICULATE_AUTOCONFIGURE=00 B
87ENV PURGE_BUILDDEPS=false0 B
88ENV VIRTUAL_ENV=/opt/venv0 B
89ENV PATH=/opt/venv/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin0 B
90COPY scripts/install_python.sh /rocker_scripts/install_python.sh # buildkit1.26 KB
91RUN /bin/sh -c /rocker_scripts/install_python.sh #43.3 MB
92COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh # buildkit891 B
93RUN /bin/sh -c /rocker_scripts/install_tidyverse.sh #171.91 MB
94ENV S6_VERSION=v2.1.0.20 B
95ENV RSTUDIO_VERSION=2024.12.0+4670 B
96ENV DEFAULT_USER=rstudio0 B
97COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh # buildkit1.87 KB
98COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh # buildkit751 B
99COPY scripts/default_user.sh /rocker_scripts/default_user.sh # buildkit718 B
100COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh # buildkit523 B
101COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh # buildkit3.13 KB
102COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh # buildkit343 B
103RUN /bin/sh -c /rocker_scripts/install_rstudio.sh #311.77 MB
104EXPOSE map[8787/tcp:{}]0 B
105CMD ["/init"]0 B
106COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh # buildkit1.25 KB
107RUN /bin/sh -c /rocker_scripts/install_pandoc.sh #31.53 MB
108COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh # buildkit1.06 KB
109RUN /bin/sh -c /rocker_scripts/install_quarto.sh #285.08 KB
110COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh # buildkit1.34 KB
111COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh # buildkit1.31 KB
112RUN /bin/sh -c /rocker_scripts/install_verse.sh #326.36 MB
113COPY scripts/install_geospatial.sh /rocker_scripts/install_geospatial.sh # buildkit1.04 KB
114RUN /bin/sh -c /rocker_scripts/install_geospatial.sh #322.19 MB
115COPY scripts /rocker_scripts # buildkit9.9 KB
116ENV BIOCONDUCTOR_USE_CONTAINER_REPOSITORY=TRUE0 B
117ARG TARGETARCH=amd640 B
118ENV TARGETARCH=amd640 B
119COPY / / # buildkit510.02 MB
120LABEL name=bioconductor/bioconductor_docker version= url=https://github.com/Bioconductor/bioconductor_docker vendor=Bioconductor0 B
121ARG BIOCONDUCTOR_VERSION=3.200 B
122ARG BIOCONDUCTOR_PATCH=350 B
123ARG BIOCONDUCTOR_DOCKER_VERSION=3.20.350 B
124ARG TARGETPLATFORM=linux/amd640 B
125ENV TARGETPLATFORM=linux/amd640 B
126ENV PLATFORM=linux/amd640 B
127ENV LIBSBML_CFLAGS=-I/usr/include0 B
128ENV LIBSBML_LIBS=-lsbml0 B
129ENV BIOCONDUCTOR_DOCKER_VERSION=3.20.350 B
130ENV BIOCONDUCTOR_VERSION=3.200 B
131ENV BIOCONDUCTOR_NAME=bioconductor_docker0 B
132CMD ["/init"]0 B

Command

 ARG RELEASE