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eipm/bamsurgeon:0.0.1

Manifest digest

sha256:897b5de9fc97aa9e6c224c0e8c5ed26406d0d66fd0181afadf43d250c8ea02ea

OS/ARCH

linux/amd64

Compressed size

640.49 MB

Last pushed

about 7 years by kwe2001

Type

Image

Manifest digest

sha256:897b5de9fc97aa9e6c224c0e8c5ed26406d0d66fd0181afadf43d250c8ea02ea

Image Layers

Image Layers

1ADD file ... in / 64.08 MB
2/bin/sh -c set -xe &&70.95 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*364 B
4/bin/sh -c mkdir -p /run/systemd162 B
5CMD ["/bin/bash"]0 B
6MAINTAINER Ken Eng <[email protected]>0 B
7WORKDIR /usr/local0 B
8/bin/sh -c apt-get update &&26.37 MB
9/bin/sh -c add-apt-repository -y ppa:scipy/ppa293.57 KB
10/bin/sh -c apt-get install -y131.63 MB
11/bin/sh -c pip install cython4.57 MB
12/bin/sh -c pip install pysam8.09 MB
13/bin/sh -c wget https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz17.91 MB
14/bin/sh -c tar xvzf velvet_1.2.10.tgz17.8 MB
15/bin/sh -c make -C velvet_1.2.10368.89 KB
16/bin/sh -c cp velvet_1.2.10/velvetg /usr/local/bin142.66 KB
17/bin/sh -c cp velvet_1.2.10/velveth /usr/local/bin42.36 KB
18/bin/sh -c git clone https://github.com/lh3/bwa.git1.94 MB
19/bin/sh -c cd bwa &&121.49 KB
20/bin/sh -c make -C bwa1.43 MB
21/bin/sh -c cp bwa/bwa /usr/local/bin505.3 KB
22/bin/sh -c git clone https://github.com/samtools/htslib.git10.04 MB
23/bin/sh -c cd htslib &&363.47 KB
24/bin/sh -c make -C htslib11.18 MB
25/bin/sh -c git clone https://github.com/samtools/samtools.git15.88 MB
26/bin/sh -c cd samtools &&979.1 KB
27/bin/sh -c make -C samtools8.58 MB
28/bin/sh -c cp samtools/samtools /usr/local/bin1.36 MB
29/bin/sh -c cp samtools/misc/wgsim /usr/local/bin23.24 KB
30/bin/sh -c git clone https://github.com/samtools/bcftools.git16.72 MB
31/bin/sh -c cd bcftools &&414.03 KB
32/bin/sh -c make -C bcftools2.88 MB
33/bin/sh -c cp bcftools/bcftools /usr/local/bin1.62 MB
34/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/1.131/picard-tools-1.131.zip6.86 MB
35/bin/sh -c unzip picard-tools-1.131.zip6.9 MB
36/bin/sh -c git clone https://github.com/adamewing/exonerate.git1.5 MB
37/bin/sh -c cd exonerate &&32.39 MB
38COPY dir:73017f9681b22da2be310e9897247687404c060cda31449ad44ab862c81c0263 in /usr/local/bamsurgeon 247.28 MB
39/bin/sh -c cd /usr/local/bamsurgeon &&224.63 KB
40CMD []0 B

Command

ADD file:1e01ab604c0cc308430848d15d75fa9c09a2c53f156a6a2dbdee4ac618c8c8aa in /