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eipm/bioinformatics:1.5

Index digest

sha256:dce0da1ce841c46a0791ca930cb1a7d5650dc054d9327ef8b1b9babd00c32bfe

OS/ARCH

linux/amd64

Compressed size

1.12 GB

Last pushed

about 2 months by eipmsvc1rw

Type

Image

Manifest digest

sha256:d9d5c27cfd00fc30b567889af9da9bce493b74e08f52b697f9dc32f12bfcac25

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.17 MB
6CMD ["/bin/bash"]0 B
7LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
8ENV R_VERSION=4.2.20 B
9ENV R_HOME=/usr/local/lib/R0 B
10ENV TZ=Etc/UTC0 B
11COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.81 KB
12RUN /bin/sh -c /rocker_scripts/install_R_source.sh #256.5 MB
13ENV CRAN=https://p3m.dev/cran/__linux__/jammy/2023-03-140 B
14ENV LANG=en_US.UTF-80 B
15COPY scripts /rocker_scripts # buildkit23.04 KB
16RUN /bin/sh -c /rocker_scripts/setup_R.sh #26.29 MB
17CMD ["R"]0 B
18LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
19ENV S6_VERSION=v2.1.0.20 B
20ENV RSTUDIO_VERSION=2023.03.0+3860 B
21ENV DEFAULT_USER=rstudio0 B
22ENV PANDOC_VERSION=default0 B
23ENV QUARTO_VERSION=default0 B
24RUN /bin/sh -c /rocker_scripts/install_rstudio.sh #248.82 MB
25RUN /bin/sh -c /rocker_scripts/install_pandoc.sh #26.6 KB
26RUN /bin/sh -c /rocker_scripts/install_quarto.sh #53.56 KB
27EXPOSE map[8787/tcp:{}]0 B
28CMD ["/init"]0 B
29LABEL org.opencontainers.image.licenses=GPL-2.0-or-later org.opencontainers.image.source=https://github.com/rocker-org/rocker-versioned2 org.opencontainers.image.vendor=Rocker Project0 B
30RUN /bin/sh -c /rocker_scripts/install_tidyverse.sh #158.71 MB
31ENV APP_NAME=bioinformatics TZ=US/Eastern PROGRAMS=opt STAR_VERSION=2.7.6a0 B
32RUN /bin/sh -c apt-get update317.92 MB
33COPY /usr/local/bin /usr/local/bin # buildkit17.62 MB
34RUN /bin/sh -c true #32 B
35COPY /opt/samtools-1.19 /opt/samtools-1.19 # buildkit86.4 MB
36RUN /bin/sh -c mkdir -p116 B
37ADD installPackages.R /R/scripts # buildkit398 B
38RUN /bin/sh -c Rscript /R/scripts/installPackages.R5.74 MB
39COPY combine_pindel_vcfs.sh opt # buildkit242 B

Command

 ARG RELEASE