eipm/bioinformatics:develop

Index digest

sha256:efa008e49e10b284ef512892b36c91c6c34f744695c9856f2efcdbff56ac7932

OS/ARCH

linux/amd64

Compressed size

1.44 GB

Last pushed

about 1 year by eipmsvc1rw

Type

Image

Manifest digest

sha256:27a401b6eda332cb51dab91d5b077b37ea47dbde3f12925eceb93c49ed4a02e6

Image Layers

Image Layers

1ARG RELEASE0 B

2ARG LAUNCHPAD_BUILD_ARCH0 B

3LABEL org.opencontainers.image.ref.name=ubuntu0 B

4LABEL org.opencontainers.image.version=24.040 B

5ADD file ... in / 28.34 MB

6CMD ["/bin/bash"]0 B

7ENV R_VERSION=4.5.10 B

8ENV R_HOME=/usr/local/lib/R0 B

9ENV TZ=Etc/UTC0 B

10COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh # buildkit1.81 KB

11RUN /bin/sh -c /rocker_scripts/install_R_source.sh #289.42 MB

12ENV CRAN=https://p3m.dev/cran/__linux__/noble/latest0 B

13ENV LANG=en_US.UTF-80 B

14COPY scripts/bin/ /rocker_scripts/bin/ # buildkit2.76 KB

15COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh # buildkit1.5 KB

16RUN /bin/sh -c if grep27.17 MB

17COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh # buildkit902 B

18RUN /bin/sh -c /rocker_scripts/install_tidyverse.sh #187.62 MB

19ENV S6_VERSION=v2.1.0.20 B

20ENV RSTUDIO_VERSION=2025.05.1+5130 B

21ENV DEFAULT_USER=rstudio0 B

22COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh # buildkit1.87 KB

23COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh # buildkit753 B

24COPY scripts/default_user.sh /rocker_scripts/default_user.sh # buildkit718 B

25COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh # buildkit525 B

26COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh # buildkit3.13 KB

27COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh # buildkit347 B

28RUN /bin/sh -c /rocker_scripts/install_rstudio.sh #313.88 MB

29EXPOSE map[8787/tcp:{}]0 B

30CMD ["/init"]0 B

31COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh # buildkit1.25 KB

32RUN /bin/sh -c /rocker_scripts/install_pandoc.sh #32.4 MB

33COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh # buildkit1.06 KB

34RUN /bin/sh -c /rocker_scripts/install_quarto.sh #1.72 MB

35COPY scripts /rocker_scripts # buildkit14.4 KB

36ENV APP_NAME=bioinformatics TZ=US/Eastern PROGRAMS=opt STAR_VERSION=2.7.6a0 B

37RUN /bin/sh -c apt-get update252.71 MB

38COPY /usr/local/bin /usr/local/bin # buildkit17.14 MB

39RUN /bin/sh -c true #32 B

40COPY /opt/samtools-1.19 /opt/samtools-1.19 # buildkit86.22 MB

41COPY /usr/bin/mafft /usr/bin/ # buildkit21.03 KB

42COPY /usr/bin/mafft-homologs.rb /usr/bin/mafft-homologs.rb # buildkit3.96 KB

43COPY /usr/bin/mafft-sparsecore.rb /usr/bin/mafft-sparsecore.rb # buildkit2.57 KB

44COPY /usr/bin/mafft-profile /usr/bin/mafft-profile # buildkit545.14 KB

45RUN /bin/sh -c mkdir /usr/libexec/mafft144 B

46COPY /usr/libexec/mafft/ /usr/libexec/mafft/ # buildkit16.25 MB

47RUN /bin/sh -c mkdir -p115 B

48ADD installPackages.R /R/scripts # buildkit606 B

49RUN /bin/sh -c Rscript /R/scripts/installPackages.R225.98 MB

50COPY combine_pindel_vcfs.sh opt # buildkit243 B

Command

 ARG RELEASE