eipm/ervmap:1.2.1-alpha

Manifest digest

sha256:efd535b61b74b9ac1b7bb886c3409ace33dbf592fb58816be5f6318a355251c4

OS/ARCH

linux/amd64

Compressed size

301.07 MB

Last pushed

almost 6 years by eipmsvc1rw

Type

Image

Manifest digest

sha256:efd535b61b74b9ac1b7bb886c3409ace33dbf592fb58816be5f6318a355251c4

Image Layers

1ADD file ... in / 27.24 MB

2/bin/sh -c set -xe &&847 B

3/bin/sh -c [ -z "$(apt-get0 B

4/bin/sh -c mkdir -p /run/systemd162 B

5CMD ["/bin/bash"]0 B

6LABEL org.opencontainers.image.source=https://github.com/eipm/ERVmap vendor=Englander Institute0 B

7ENV APP_NAME=ERVmap TZ=US/Eastern PROGRAMS=opt0 B

8/bin/sh -c ln -snf /usr/share/zoneinfo/$TZ193 B

9/bin/sh -c apt-get update &&212.26 MB

10ENV SAMTOOLS_VERSION=1.90 B

11ENV HTSLIB_VERSION=1.90 B

12ENV samtools_dir=/opt/samtools-1.90 B

13ENV htslib_dir=/opt/samtools-1.9/htslib-1.90 B

14/bin/sh -c wget -O samtools-${SAMTOOLS_VERSION}.tar.bz247.54 MB

15ENV STAR_VERSION=2.7.6a0 B

16ENV star_dir=/opt/STAR-2.7.6a0 B

17/bin/sh -c wget -O STAR-${STAR_VERSION}.tar.gz13.76 MB

18/bin/sh -c ln -s ${star_dir}/source/STAR190 B

19COPY dir:2247ff489b7f377531846933d1453895de3b8a89e3d15ca433c9115203725824 in /usr/local/bin 0 B

20COPY file:b2849891db91fc20348dede997dc009fe6ae9646814ddaf4b92223d29722069e in /usr/bin/coverageBed 0 B

21COPY file:7fdbd86aba336c57f9a9edfb4c9b062220ea756a34e2a7886f96c2b68e958e8f in /usr/bin/bedtools 0 B

22COPY file:80e52f1035cb96c431b13c85195e4fd1534e1708e718c2f07ff99cd4a43a6463 in /opt/STAR-2.7.6a/source/STAR 0 B

23/bin/sh -c mkdir -p /scripts151 B

24/bin/sh -c chmod ugo+wx /results115 B

25COPY file:f9b15ca72d6118da2e0143a4fbf69482bf61e02ed507532959c6283d44efcff7 in /scripts 1.38 KB

26COPY file:5f927c3469ebeda5b27fce5898230a54265c2445de8e0fe18521054bfef34968 in /scripts 1.19 KB

27COPY file:e092e50ac6e7c50ca89a4073fadfc816971ecac0b2753ab990aa35e9df0f7085 in /scripts 718 B

28COPY file:a1544a6c7dfa81cb3ec249f5d1e472dc3aa9c82a2a4c484626cb8095427211a2 in /resources/ERVmap.bed 277.19 KB

29WORKDIR /scripts0 B

30ENTRYPOINT ["/scripts/ERVmapping.sh"]0 B

Command

ADD file:435d9776fdd3a1834f344fb82e459dbbb67cd50c71ab5e29b719273888d5bb7c in /