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indigodatacloudapps/trufa-assembly-expression:latest

Manifest digest

sha256:3cfb64d9bef6a7a74393ee06f41a69cbdbaff05d46e2164a32eaad01821f8a0d

OS/ARCH

linux/amd64

Compressed size

3.29 GB

Last pushed

almost 9 years by indigodatacloudapps

Type

Image

Manifest digest

sha256:3cfb64d9bef6a7a74393ee06f41a69cbdbaff05d46e2164a32eaad01821f8a0d

Image Layers

Image Layers

1ADD file ... in / 45.41 MB
2/bin/sh -c set -xe &&850 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'851 B
5/bin/sh -c mkdir -p /run/systemd168 B
6CMD ["/bin/bash"]0 B
7MAINTAINER [email protected]0 B
8/bin/sh -c apt-get update &&532.34 MB
9/bin/sh -c curl -L https://cpanmin.us1.21 MB
10/bin/sh -c cpanm install DB_File749.12 KB
11/bin/sh -c cpanm install URI::Escape665 B
12ENV SRC=/usr/local/src0 B
13ENV BIN=/usr/local/bin0 B
14WORKDIR /usr/local/src0 B
15ENV R_VERSION=R-3.3.20 B
16/bin/sh -c curl https://cran.r-project.org/src/base/R-3/$R_VERSION.tar.gz -o166.84 MB
17/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);4.77 MB
18/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);133.7 MB
19/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);2.13 MB
20/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);491.27 KB
21/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);1.9 MB
22/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);17.5 MB
23/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);2.66 MB
24/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);217.91 MB
25/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);2.26 MB
26/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);734.51 KB
27/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);4.57 MB
28WORKDIR /usr/local/src0 B
29/bin/sh -c wget https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.1.2/bowtie-1.1.2-linux-x86_64.zip/download -O33.99 MB
30/bin/sh -c mkdir /usr/local/lib/site_perl152 B
31WORKDIR /usr/local/src0 B
32/bin/sh -c wget https://github.com/deweylab/RSEM/archive/v1.2.31.tar.gz &&34.94 MB
33WORKDIR /usr/local/src0 B
34/bin/sh -c wget https://github.com/pachterlab/kallisto/releases/download/v0.42.5/kallisto_linux-v0.42.5.tar.gz &&25.65 MB
35WORKDIR /usr/local/src0 B
36/bin/sh -c wget https://github.com/COMBINE-lab/salmon/releases/download/v0.8.0/Salmon-0.8.0_linux_x86_64.tar.gz &&11.34 MB
37WORKDIR /usr/local/src0 B
38/bin/sh -c wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.5.zip &&19 MB
39WORKDIR /usr/local/src0 B
40/bin/sh -c wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-x64-linux.tar.gz &&644.7 MB
41WORKDIR /usr/local/src0 B
42/bin/sh -c wget https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.3.2/bowtie2-2.3.2-linux-x86_64.zip/download -O24.04 MB
43/bin/sh -c echo oracle-java8-installer shared/accepted-oracle-license-v1-1191.68 MB
44/bin/sh -c sed 's/main$/main universe/'851 B
45/bin/sh -c apt-get update -y35.95 MB
46/bin/sh -c apt-get install -y17.39 MB
47/bin/sh -c apt-get install -y5.8 MB
48/bin/sh -c mkdir -p /opt/geneid2.76 MB
49ADD b3233af1467d13522c1fb5b57486a1a1ea7c41928463c89fdf2b03ed3298ca36 in /opt/ 12.09 MB
50/bin/sh -c cd /opt/ &&11.95 MB
51ENV WISECONFIGDIR=/opt/genewise/current/wisecfg/0 B
52ENV CEGMA=/opt/cegma0 B
53ENV PERL5LIB=/opt/cegma/lib0 B
54ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/cegma/bin:/opt/geneid/current/bin/0 B
55/bin/sh -c git clone --depth265.08 MB
56/bin/sh -c rm -rf /tmp/picard-tools-*0 B
57/bin/sh -c Rscript -e 'source("http://bioconductor.org/biocLite.R");library(BiocInstaller);675.28 KB
58WORKDIR /usr/local/src0 B
59ENV TRINITY_VERSION=2.4.00 B
60WORKDIR /usr/local/src0 B
61/bin/sh -c TRINITY_URL="https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v${TRINITY_VERSION}.tar.gz" && 165.05 MB
62/bin/sh -c tar -xvf Trinity-v${TRINITY_VERSION}.tar.gz164.76 MB
63/bin/sh -c cd trinityrnaseq-Trinity-v${TRINITY_VERSION} &&56.2 MB
64ENV TRINITY_HOME=/usr/local/src/trinityrnaseq-Trinity-v2.4.00 B
65/bin/sh -c cp $TRINITY_HOME/trinity-plugins/BIN/samtools $BIN1.39 MB
66ENV PATH=/usr/local/src/trinityrnaseq-Trinity-v2.4.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/cegma/bin:/opt/geneid/current/bin/0 B
67COPY file:c539610f32e582fbac5267873980ea6054677433e8ff508837f51e5a99941fbf in /usr/local/src/Dockerfile.2.4.0 2.52 KB
68/bin/sh -c apt-get install -y794.05 KB
69/bin/sh -c cd /usr/local/src &&306 B
70/bin/sh -c git clone git://github.com/matplotlib/matplotlib.git381.75 MB
71/bin/sh -c cd /tmp0 B
72/bin/sh -c wget https://launchpad.net/ubuntu/+archive/primary/+files/hisat2_2.0.5.orig.tar.xz2.58 MB
73/bin/sh -c tar -xvf hisat2_2*tar.xz3.85 MB
74/bin/sh -c cd hisat2-2.0.5 &&22.53 MB
75/bin/sh -c cd /opt &&94.9 MB
76ENV PATH=/opt/cufflinks-2.2.1.Linux_x86_64:/usr/local/src/trinityrnaseq-Trinity-v2.4.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/cegma/bin:/opt/geneid/current/bin/0 B
77/bin/sh -c cd /opt &&5.52 MB
78ENV PATH=/opt/express-1.5.1-linux_x86_64:/opt/cufflinks-2.2.1.Linux_x86_64:/usr/local/src/trinityrnaseq-Trinity-v2.4.0:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/cegma/bin:/opt/geneid/current/bin/0 B

Command

ADD file:5b334adf9d9a2256add2a801b49d4b23c93b0973ec22bb798973d571c948f102 in /