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kapsakcj/pangolin:4.3-pdata-1.20

Manifest digest

sha256:f4853fb2322e381475d071152273e7485d6172d0753386fd729a1dabc021137a

OS/ARCH

linux/amd64

Compressed size

1013.81 MB

Last pushed

over 3 years by kapsakcj

Type

Image

Manifest digest

sha256:f4853fb2322e381475d071152273e7485d6172d0753386fd729a1dabc021137a

Image Layers

Image Layers

1ADD file ... in / 29.95 MB
2CMD ["bash"]0 B
3ENV LANG=C.UTF-8 LC_ALL=C.UTF-80 B
4ENV ENV_NAME=base0 B
5ENV MAMBA_ROOT_PREFIX=/opt/conda0 B
6ENV MAMBA_EXE=/bin/micromamba0 B
7COPY /etc/ssl/certs/ca-certificates.crt /etc/ssl/certs/ca-certificates.crt # buildkit112.52 KB
8COPY /tmp/bin/micromamba /bin/micromamba # buildkit5.41 MB
9RUN /bin/sh -c { grep32 B
10ARG MAMBA_USER=mambauser0 B
11ARG MAMBA_USER_ID=10000 B
12ARG MAMBA_USER_GID=10000 B
13ENV MAMBA_USER=mambauser0 B
14COPY _dockerfile_initialize_user_accounts.sh /usr/local/bin/_dockerfile_initialize_user_accounts.sh # buildkit522 B
15COPY _dockerfile_setup_root_prefix.sh /usr/local/bin/_dockerfile_setup_root_prefix.sh # buildkit283 B
16RUN |3 MAMBA_USER=mambauser MAMBA_USER_ID=1000 MAMBA_USER_GID=10004.45 KB
17USER mambauser0 B
18WORKDIR /tmp32 B
19COPY _entrypoint.sh /usr/local/bin/_entrypoint.sh # buildkit683 B
20COPY _activate_current_env.sh /usr/local/bin/_activate_current_env.sh # buildkit641 B
21ENTRYPOINT ["/usr/local/bin/_entrypoint.sh"]0 B
22CMD ["/bin/bash"]0 B
23COPY _dockerfile_shell.sh /usr/local/bin/_dockerfile_shell.sh # buildkit342 B
24SHELL [/usr/local/bin/_dockerfile_shell.sh]0 B
25USER root0 B
26WORKDIR /0 B
27ARG PANGOLIN_VER=v4.30 B
28ARG PANGOLIN_DATA_VER=v1.200 B
29ARG SCORPIO_VER=v0.3.170 B
30ARG CONSTELLATIONS_VER=v0.1.100 B
31ARG USHER_VER=0.6.20 B
32LABEL base.image=mambaorg/micromamba:1.4.30 B
33LABEL dockerfile.version=10 B
34LABEL software=pangolin0 B
35LABEL software.version=v4.30 B
36LABEL description=Conda environment for Pangolin.0 B
37LABEL website=https://github.com/cov-lineages/pangolin0 B
38LABEL license=GNU General Public License0 B
39LABEL license.url=https://github.com/cov-lineages/pangolin/blob/master/LICENSE.txt0 B
40LABEL maintainer=Curtis Kapsak0 B
41LABEL [email protected]0 B
42RUN |5 PANGOLIN_VER=v4.3 PANGOLIN_DATA_VER=v1.20 SCORPIO_VER=v0.3.1725.39 MB
43RUN |5 PANGOLIN_VER=v4.3 PANGOLIN_DATA_VER=v1.20 SCORPIO_VER=v0.3.17204.44 KB
44ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin LC_ALL=C.UTF-80 B
45RUN |5 PANGOLIN_VER=v4.3 PANGOLIN_DATA_VER=v1.20 SCORPIO_VER=v0.3.17548.5 MB
46ENV ENV_NAME=pangolin0 B
47ARG MAMBA_DOCKERFILE_ACTIVATE=10 B
48WORKDIR /pangolin32 B
49RUN |6 PANGOLIN_VER=v4.3 PANGOLIN_DATA_VER=v1.20 SCORPIO_VER=v0.3.17382.56 MB
50WORKDIR /data32 B
51ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/envs/pangolin/bin/0 B
52CMD ["pangolin" "-h"]0 B
53ENV ENV_NAME=pangolin0 B
54ARG MAMBA_DOCKERFILE_ACTIVATE=10 B
55RUN |1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh pangolin921 B
56RUN |1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh pangolin899 B
57ADD https://raw.githubusercontent.com/StaPH-B/docker-builds/master/tests/SARS-CoV-2/SRR13957123.consensus.fa /test-data/SRR13957123.consensus.fa # buildkit8.95 KB
58RUN |1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh pangolin661 B
59RUN |1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh apt-get13.71 MB
60RUN |1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh wget7.94 MB
61RUN |1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh datasets10.3 KB
62RUN |1 MAMBA_DOCKERFILE_ACTIVATE=1 /usr/local/bin/_dockerfile_shell.sh datasets10.49 KB

Command

ADD file:a2378c1b12e95db69e24b9d347441678c6f23239292cce3c822b1524992b6ec4 in /