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mgibio/vep_helper-cwl:vep_101.0_v2

Machine learning & AI
Data science
Manifest digest

sha256:3de91fb24dca517cd47913cf6da89ca53f939a2bc1dc913544787ffbda881df9

OS/ARCH

linux/amd64

Compressed size

270.27 MB

Last pushed

over 5 years by mgibio

Type

Image

Manifest digest

sha256:3de91fb24dca517cd47913cf6da89ca53f939a2bc1dc913544787ffbda881df9

Image Layers

Image Layers

1ADD file ... in / 25.46 MB
2/bin/sh -c [ -z "$(apt-get34.54 KB
3/bin/sh -c set -xe &&848 B
4/bin/sh -c mkdir -p /run/systemd163 B
5CMD ["/bin/bash"]0 B
6/bin/sh -c apt-get update &&99.8 MB
7ENV OPT=/opt/vep0 B
8ENV OPT_SRC=/opt/vep/src0 B
9ENV PERL5LIB_TMP=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B
10ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/opt/vep/src/bioperl-live0 B
11ENV KENT_SRC=/opt/vep/src/kent-335_base/src0 B
12ENV HTSLIB_DIR=/opt/vep/src/htslib0 B
13ENV MACHTYPE=x86_640 B
14ENV DEPS=/opt/vep/src0 B
15ENV PATH=/opt/vep/src/ensembl-vep:/opt/vep/src/var_c_code:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
16ENV LANG_VAR=en_US.UTF-80 B
17/bin/sh -c useradd -r -m4.33 KB
18USER vep0 B
19COPY --chown=vep:vepdir:51d2925fe8a0976276c016c0250dc483e41a25cf73a301142b10c89e219cac5d in /opt/vep/src 60.24 MB
20USER root0 B
21WORKDIR /opt/vep/src/bioperl-ext/Bio/Ext/Align/0 B
22/bin/sh -c perl Makefile.PL &&1.15 MB
23WORKDIR /opt/vep/src/ensembl-xs0 B
24/bin/sh -c perl Makefile.PL &&443.18 KB
25WORKDIR /opt/vep/src0 B
26/bin/sh -c ensembl-vep/travisci/build_c.sh && 53.82 MB
27ENV LC_ALL=en_US.UTF-80 B
28ENV LANG=en_US.UTF-80 B
29USER vep0 B
30ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B
31WORKDIR /opt/vep/src/ensembl-vep0 B
32/bin/sh -c echo >> $OPT/.profile4.19 MB
33LABEL maintainer=John Garza <[email protected]>0 B
34LABEL description=Vep helper image0 B
35USER root0 B
36/bin/sh -c apt-get update -y24.83 MB
37WORKDIR /0 B
38/bin/sh -c ln -s /opt/vep/src/ensembl-vep/vep185 B
39WORKDIR /opt/vep/src/ensembl-vep0 B
40/bin/sh -c perl INSTALL.pl --NO_UPDATE167 B
41/bin/sh -c mkdir -p /opt/lib/perl/VEP/Plugins169 B
42WORKDIR /opt/lib/perl/VEP/Plugins0 B
43/bin/sh -c wget https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/95/Downstream.pm https://raw.githubusercontent.com/griffithlab/pVACtools/master/tools/pvacseq/VEP_plugins/Wildtype.pm318.18 KB
44COPY file:45a10e583d0e9058a005278434871086e8b7865cd478b4245e834a347c35627e in /usr/bin/vcf_check.pl 942 B
45USER vep0 B

Command

ADD file:5c125b7f411566e9daa738d8cb851098f36197810f06488c2609074296f294b2 in /