pgkb/pharmcat:3.2.0

Multi-platform

Machine learning & AI

Data science

Index digest

sha256:7740f35e11947efd8c7e05ce73bf4c7fc2e5a9eb358994ad830af42a6427d885

OS/ARCH

Compressed size

1.83 GB

Last pushed

7 months by pharmgen

Type

Image

Manifest digest

sha256:637229237f8876e49c33ffb05ba5ffd65a8d748009e3c59fa0efa294c831ce7e

Image Layers

Image Layers

1# debian.sh --arch 'arm64' out/47.35 MB

2RUN /bin/sh -c set -eux;23.86 MB

3RUN /bin/sh -c set -eux;64.45 MB

4RUN /bin/sh -c set -ex;215.69 MB

5ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

6ENV LANG=C.UTF-80 B

7RUN /bin/sh -c set -eux;5.9 MB

8ENV GPG_KEY=7169605F62C751356D054A26A821E680E5FA63050 B

9ENV PYTHON_VERSION=3.12.120 B

10ENV PYTHON_SHA256=fb85a13414b028c49ba18bbd523c2d055a30b56b18b92ce454ea2c51edc656c40 B

11RUN /bin/sh -c set -eux;23.77 MB

12RUN /bin/sh -c set -eux;250 B

13CMD ["python3"]0 B

14RUN /bin/sh -c apt-get update30.54 MB

15RUN /bin/sh -c curl https://packages.adoptium.net/artifactory/api/gpg/key/public185.78 MB

16RUN /bin/sh -c curl https://packages.cloud.google.com/apt/doc/apt-key.gpg169.38 MB

17RUN /bin/sh -c pip3 install17.55 MB

18WORKDIR /usr/local/bin/32 B

19ENV BCFTOOLS_VERSION=1.220 B

20ENV HTSLIB_VERSION=1.220 B

21ENV SAMTOOLS_VERSION=1.220 B

22

RUN /bin/sh -c wget https://github.com/samtools/htslib/releases/download/${HTSLIB_VERSION}/htslib-${HTSLIB_VERSION}.tar.bz2

21.24 MB

23RUN /bin/sh -c tar -xjf23.44 MB

24RUN /bin/sh -c cd /usr/local/bin/htslib-${HTSLIB_VERSION}/116.11 MB

25RUN /bin/sh -c rm -rf247 B

26RUN /bin/sh -c mkdir /pharmcat98 B

27WORKDIR /pharmcat32 B

28ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/pharmcat0 B

29ENV PCAT_PLATFORM=docker0 B

30RUN /bin/sh -c wget https://zenodo.org/record/7288118/files/GRCh38_reference_fasta.tar842.05 MB

31COPY preprocessor/requirements.txt ./ # buildkit195 B

32RUN /bin/sh -c pip3 install63.12 MB

33COPY src/main/config/bashrc /root/.bashrc # buildkit504 B

34COPY preprocessor/pharmcat_vcf_preprocessor preprocessor/pharmcat_pipeline bin/pharmcat bin/calc_allele_freqs26.95 MB

35RUN /bin/sh -c mkdir pcat114 B

36COPY preprocessor/pcat/*.py preprocessor/pcat/*.tsv pcat/ #16.98 KB

37RUN /bin/sh -c mkdir data110.45 KB

38CMD ["/bin/bash"]0 B

Command

# debian.sh --arch 'arm64' out/ 'trixie' '@1771804800'