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pgkb/pharmcat:3.2.0

Multi-platform
Machine learning & AI
Data science
Index digest

sha256:7740f35e11947efd8c7e05ce73bf4c7fc2e5a9eb358994ad830af42a6427d885

OS/ARCH

Compressed size

1.93 GB

Last pushed

7 months by pharmgen

Type

Image

Manifest digest

sha256:eaea807f4d332706720649025ff4a1ce5d4e2f0cacab4d542cb4d6311e834e33

Image Layers

Image Layers

1# debian.sh --arch 'amd64' out/47.01 MB
2RUN /bin/sh -c set -eux;24.43 MB
3RUN /bin/sh -c set -eux;64.64 MB
4RUN /bin/sh -c set -ex;225.1 MB
5ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
6ENV LANG=C.UTF-80 B
7RUN /bin/sh -c set -eux;5.8 MB
8ENV GPG_KEY=7169605F62C751356D054A26A821E680E5FA63050 B
9ENV PYTHON_VERSION=3.12.120 B
10ENV PYTHON_SHA256=fb85a13414b028c49ba18bbd523c2d055a30b56b18b92ce454ea2c51edc656c40 B
11RUN /bin/sh -c set -eux;24.47 MB
12RUN /bin/sh -c set -eux;250 B
13CMD ["python3"]0 B
14RUN /bin/sh -c apt-get update30.7 MB
15RUN /bin/sh -c curl https://packages.adoptium.net/artifactory/api/gpg/key/public186.95 MB
16RUN /bin/sh -c curl https://packages.cloud.google.com/apt/doc/apt-key.gpg241.09 MB
17RUN /bin/sh -c pip3 install18.08 MB
18WORKDIR /usr/local/bin/32 B
19ENV BCFTOOLS_VERSION=1.220 B
20ENV HTSLIB_VERSION=1.220 B
21ENV SAMTOOLS_VERSION=1.220 B
22RUN /bin/sh -c wget https://github.com/samtools/htslib/releases/download/${HTSLIB_VERSION}/htslib-${HTSLIB_VERSION}.tar.bz221.24 MB
23RUN /bin/sh -c tar -xjf23.44 MB
24RUN /bin/sh -c cd /usr/local/bin/htslib-${HTSLIB_VERSION}/126.44 MB
25RUN /bin/sh -c rm -rf247 B
26RUN /bin/sh -c mkdir /pharmcat98 B
27WORKDIR /pharmcat32 B
28ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/pharmcat0 B
29ENV PCAT_PLATFORM=docker0 B
30RUN /bin/sh -c wget https://zenodo.org/record/7288118/files/GRCh38_reference_fasta.tar842.05 MB
31COPY preprocessor/requirements.txt ./ # buildkit194 B
32RUN /bin/sh -c pip3 install65.47 MB
33COPY src/main/config/bashrc /root/.bashrc # buildkit504 B
34COPY preprocessor/pharmcat_vcf_preprocessor preprocessor/pharmcat_pipeline bin/pharmcat bin/calc_allele_freqs26.95 MB
35RUN /bin/sh -c mkdir pcat115 B
36COPY preprocessor/pcat/*.py preprocessor/pcat/*.tsv pcat/ #16.98 KB
37RUN /bin/sh -c mkdir data110.42 KB
38CMD ["/bin/bash"]0 B

Command

# debian.sh --arch 'amd64' out/ 'trixie' '@1771804800'