rbrown1422/rbrown-ng_chm:2.5.3

Manifest digest

sha256:691045fe4147d457e376f4e8296805f8dd7f6bf424667a94f50ff2ed79e83fae

OS/ARCH

linux/amd64

Compressed size

629.41 MB

Last pushed

almost 8 years by rbrown1422

Type

Image

Manifest digest

sha256:691045fe4147d457e376f4e8296805f8dd7f6bf424667a94f50ff2ed79e83fae

Image Layers

Image Layers

1ADD file ... in /63.99 MB

2/bin/sh -c set -xe &&70.85 KB

3/bin/sh -c sed -i 's/^#\s*$deb.*universe$$/\1/g'676 B

4CMD ["/bin/bash"]0 B

5MAINTAINER Björn A. Grüning, Dave0 B

6ENV DEBIAN_FRONTEND=noninteractive0 B

7/bin/sh -c apt-get -qq update193.72 MB

8/bin/sh -c git clone --branch1.49 MB

9MAINTAINER Björn A. Grüning, [email protected]0 B

10

ENV GALAXY_RELEASE=release_16.01 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central GALAXY_CONFIG_DIR=/etc/galaxy

0 B

11

ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.ini GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml GALAXY_VIRTUALENV=/galaxy-central/.venv/

0 B

12/bin/sh -c locale-gen en_US.UTF-8 &&408.78 KB

13/bin/sh -c groupadd -r postgres2.03 KB

14/bin/sh -c apt-get -qq update110.44 MB

15/bin/sh -c groupadd -r $GALAXY_USER21.41 KB

16ADD file ... in /home/galaxy/.bashrc1.7 KB

17/bin/sh -c mkdir $GALAXY_ROOT &&10.42 MB

18/bin/sh -c su $GALAXY_USER -c17.8 KB

19ADD file ... in /etc/galaxy/reports_wsgi.ini1.51 KB

20ADD file ... in /etc/nginx/htpasswd182 B

21ADD dir:0fd29fcc729ef90f2dd7977e1c143062970bde758ef2a4656ee65bf9cc57dd21 in /tmp/ansible/roles39.85 KB

22ADD file ... in /tmp/ansible/provision.yml240 B

23/bin/sh -c ansible-playbook /tmp/ansible/provision.yml 50.85 MB

24/bin/sh -c mkdir /shed_tools &&105 B

25USER [galaxy]0 B

26WORKDIR /galaxy-central0 B

27/bin/sh -c mkdir $GALAXY_ROOT/tool_deps133 B

28

ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 GALAXY_CONFIG_TOOL_DEPENDENCY_DIR=./tool_deps [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F3

0 B

29/bin/sh -c ./scripts/common_startup.sh && 456.62 KB

30ADD file ... in /etc/galaxy/web/welcome_image.png49.54 KB

31ADD file ... in /etc/galaxy/web/welcome.html1.03 KB

32USER [root]0 B

33ADD file ... in /usr/local/bin/setup_postgresql.py1.27 KB

34ADD file ... in /usr/local/bin/export_user_files.py1.94 KB

35/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf8.06 MB

36ADD dir:86c963fae0effe213d30a64344eb131f9f7a99f812bd77e1d60ce2a53853b734 in /home/galaxy/ansible/galaxy-tools-playbook19.81 KB

37/bin/sh -c chown -R $GALAXY_USER:$GALAXY_USER19.82 KB

38ADD file ... in /home/galaxy/tool_sheds_conf.xml350 B

39ADD file ... in /usr/bin/add-tool-shed575 B

40ADD file ... in /usr/bin/startup_lite611 B

41ADD file ... in /usr/bin/install-tools1014 B

42ADD file ... in /usr/bin/install-biojs337 B

43/bin/sh -c chmod +x /usr/bin/install-tools3.29 KB

44ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B

45EXPOSE 80/tcp0 B

46EXPOSE 21/tcp0 B

47EXPOSE 8800/tcp0 B

48EXPOSE 9002/tcp0 B

49VOLUME [/export/ /data/ /var/lib/docker]0 B

50CMD ["/usr/bin/startup"]0 B

51/bin/sh -c apt-get update21.94 MB

52/bin/sh -c apt-get install -y16.29 MB

53/bin/sh -c apt-get install -y7.98 MB

54/bin/sh -c add-apt-repository -y ppa:openjdk-r/ppa1.63 KB

55/bin/sh -c apt-get update21.95 MB

56/bin/sh -c apt-get install -y100.63 MB

57/bin/sh -c update-alternatives --set java4.74 KB

58ADD multi:937209a036e3824e152e51b75b8884a99e9116c1fdd323b1a4fd8d2b96378a18 in /galaxy-central/tools/Heat_Map_Creation/ 7.8 KB

59ADD file ... in /galaxy-central/tools/Heat_Map_Creation/ 9.17 MB

60/bin/sh -c chmod +x /galaxy-central/tools/Heat_Map_Creation/173 B

61/bin/sh -c chmod 777 /galaxy-central/tools/Heat_Map_Creation174 B

62

COPY dir:c397edee92ad266098892649775a762c19d16c31d7e5e766f7472f0ff20183ec in /galaxy-central/config/plugins/visualizations/mda_heatmap_viz/

936.26 KB

63/bin/sh -c chmod 777 /galaxy-central/config/plugins/visualizations/mda_heatmap_viz/212 B

64

ADD multi:f706e074220a119024ae2821a97456bf4a8a736e858bb34b1758fe68c83589d1 in /galaxy-central/tools/Advanced_Heat_Map_Creation/

6.28 KB

65ADD file ... in /galaxy-central/tools/Advanced_Heat_Map_Creation/ 3.42 KB

66ADD file ... in /galaxy-central/tools/Advanced_Heat_Map_Creation/ 9.17 MB

67/bin/sh -c chmod +x /galaxy-central/tools/Advanced_Heat_Map_Creation/heatmap_advanced.sh1.25 KB

68/bin/sh -c chmod 777 /galaxy-central/tools/Advanced_Heat_Map_Creation182 B

69

ADD multi:bffb7d6e06b4d7a298900672e3d97295eb2eec2f8c2b22d4d1819baf8f726a93 in /galaxy-central/tools/Matrix_Manipulation/

32.55 KB

70/bin/sh -c PYTHONPATH='/usr/local/lib/python2.7/dist-packages/'0 B

71/bin/sh -c chmod 777 /galaxy-central/tools/Matrix_Manipulation171 B

72/bin/sh -c sed -i '/<toolbox1.28 KB

73/bin/sh -c sed -i '/<toolbox1.3 KB

74/bin/sh -c chmod -777 49.55 KB

75COPY file:61b8a1baf933e1132e931fc3e7ddc1efdd5bfc284325b7639a437f1f0764bd8e in /etc/galaxy/web/welcome_image.png 226.03 KB

76/bin/sh -c chmod 777 /galaxy-central/static142 B

77ADD file ... in /galaxy-central/test-data/ 405.73 KB

78ADD file ... in /galaxy-central/test-data/ 1.1 KB

79ADD file ... in /galaxy-central/test-data/ 1.22 KB

80ADD file ... in /galaxy-central/test-data/ 589.02 KB

Command

ADD file:ed7184ebed5263e677853672e93d079d09ce4a5eeca75c527aed68281c06fc88 in /