uwgac/topmed-devel:2.10.0

Languages & frameworks

Data science

Manifest digest

sha256:2276d3910932891f480f175152b24ade984806300df9d20e56cb4ccc4fc239b6

OS/ARCH

linux/amd64

Compressed size

3.21 GB

Last pushed

over 5 years by smgogarten

Type

Image

Manifest digest

sha256:2276d3910932891f480f175152b24ade984806300df9d20e56cb4ccc4fc239b6

Image Layers

Image Layers

1ADD file ... in / 25.45 MB

2/bin/sh -c [ -z "$(apt-get34.54 KB

3/bin/sh -c set -xe &&844 B

4/bin/sh -c mkdir -p /run/systemd163 B

5CMD ["/bin/bash"]0 B

6ARG mkl_version=2018.1.1630 B

7ENV TZ=America/Los_Angeles0 B

8|1 mkl_version=2020.1.217 /bin/sh -c ln199 B

9|1 mkl_version=2020.1.217 /bin/sh -c apt-get744.98 MB

10|1 mkl_version=2020.1.217 /bin/sh -c apt-get1.33 MB

11|1 mkl_version=2020.1.217 /bin/sh -c echo533 B

12|1 mkl_version=2020.1.217 /bin/sh -c apt-get11.82 MB

13|1 mkl_version=2020.1.217 /bin/sh -c mkdir186 B

14ADD file ... in /usr/local/src/mkl/ 496.39 MB

15|1 mkl_version=2020.1.217 /bin/sh -c echo1002.48 MB

16|1 mkl_version=2020.1.217 /bin/sh -c apt-get140.34 KB

17|1 mkl_version=2020.1.217 /bin/sh -c apt-get22.47 MB

18|1 mkl_version=2020.1.217 /bin/sh -c update-alternatives4.97 KB

19|1 mkl_version=2020.1.217 /bin/sh -c update-alternatives4.99 KB

20/bin/sh -c apt-get update &&1.17 MB

21/bin/sh -c apt-get update &&1.34 MB

22ARG APP_BSRC=/usr/local/src0 B

23ARG ST_SRC=/usr/local/src/samtools0 B

24ARG APP_BBIN=/usr/local/bin0 B

25ARG ST_INSTALL=/usr/local0 B

26ARG THE_APP=htslib0 B

27|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools26.2 MB

28ARG THE_APP=samtools0 B

29|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools25.25 MB

30ARG THE_APP=bcftools0 B

31|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools18.32 MB

32|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools596.43 KB

33|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools0 B

34|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools186 B

35|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools19.97 MB

36|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools374.37 KB

37|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools10.17 MB

38|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools164.05 KB

39|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools840.19 KB

40|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools2.09 MB

41|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools492.49 KB

42|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.29 MB

43|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.09 MB

44|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools16.69 MB

45|5 APP_BBIN=/usr/local/bin APP_BSRC=/usr/local/src ST_INSTALL=/usr/local ST_SRC=/usr/local/src/samtools1.62 MB

46ARG ra_version0 B

47ENV R_VERSION=4.0.40 B

48|1 ra_version=4.0.4 /bin/sh -c mkdir64.22 MB

49|1 ra_version=4.0.4 /bin/sh -c mkdir174 B

50|1 ra_version=4.0.4 /bin/sh -c apt-get11.42 MB

51|1 ra_version=4.0.4 /bin/sh -c echo122.93 MB

52|1 ra_version=4.0.4 /bin/sh -c ln206 B

53ARG p_version=4.0.4p0 B

54|2 p_version=4.0.4p ra_version=4.0.4 /bin/sh -c122.88 MB

55|2 p_version=4.0.4p ra_version=4.0.4 /bin/sh -c206 B

56|2 p_version=4.0.4p ra_version=4.0.4 /bin/sh -c183 B

57|2 p_version=4.0.4p ra_version=4.0.4 /bin/sh -c18.58 KB

58ADD file ... in /usr/local/bin/ 607 B

59|2 p_version=4.0.4p ra_version=4.0.4 /bin/sh -c194 B

60ARG git_branch0 B

61ENV ANALYSIS_PIPELINE_BRANCH=master0 B

62|1 git_branch=master /bin/sh -c echo0 B

63|1 git_branch=master /bin/sh -c mkdir103.04 MB

64|1 git_branch=master /bin/sh -c ln178 B

65|1 git_branch=master /bin/sh -c R_switch195 B

66|1 git_branch=master /bin/sh -c echo0 B

67|1 git_branch=master /bin/sh -c cd157.61 MB

68|1 git_branch=master /bin/sh -c R_switch197 B

69|1 git_branch=master /bin/sh -c echo0 B

70|1 git_branch=master /bin/sh -c cd157.61 MB

71ARG git_branch0 B

72ENV ANALYSIS_PIPELINE_BRANCH=devel0 B

73|1 git_branch=devel /bin/sh -c echo0 B

74|1 git_branch=devel /bin/sh -c mkdir103 MB

75ENV AP_LINK=/usr/local/analysis_pipeline0 B

76|1 git_branch=devel /bin/sh -c if166 B

77|1 git_branch=devel /bin/sh -c ln177 B

78|1 git_branch=devel /bin/sh -c R_switch190 B

79|1 git_branch=devel /bin/sh -c echo0 B

80|1 git_branch=devel /bin/sh -c cd3.27 MB

81|1 git_branch=devel /bin/sh -c R_switch194 B

82|1 git_branch=devel /bin/sh -c echo0 B

83|1 git_branch=devel /bin/sh -c echo0 B

84|1 git_branch=devel /bin/sh -c cd3.27 MB

85ARG git_branch0 B

86ENV ANALYSIS_PIPELINE_BRANCH=devel0 B

87|1 git_branch=devel /bin/sh -c echo0 B

88ENV AP_DIR=/usr/local/src/topmed_devel0 B

89|1 git_branch=devel /bin/sh -c if13.63 KB

90ENV AP_LINK=/usr/local/analysis_pipeline0 B

91|1 git_branch=devel /bin/sh -c if166 B

92|1 git_branch=devel /bin/sh -c ln177 B

93ADD file ... in /usr/local/bin 3 KB

94ADD file ... in /usr/local/bin 3 KB

95|1 git_branch=devel /bin/sh -c groupadd5.6 KB

96|1 git_branch=devel /bin/sh -c mkdir262 B

97|1 git_branch=devel /bin/sh -c sed1.87 KB

98|1 git_branch=devel /bin/sh -c sed1.87 KB

99|1 git_branch=devel /bin/sh -c sed1.87 KB

100ADD file ... in /usr/local/bin 242 B

101USER topmed:topmed0 B

102ENTRYPOINT ["/usr/local/bin/umask.sh"]0 B

Command

ADD file:1e8d02626176dc8141df3c0a1365774ce73d79934654fe24a4b1e7f173108232 in /