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virtualflybrain/vfb-pipeline-dumps:hkir-dev-patch-5

Manifest digest

sha256:803f95b083f070ce2f5a443443a592789ab3e09efce29e79a13a97d731a7465a

OS/ARCH

linux/amd64

Compressed size

759.46 MB

Last pushed

about 2 years by rcourt

Type

Image

Manifest digest

sha256:803f95b083f070ce2f5a443443a592789ab3e09efce29e79a13a97d731a7465a

Image Layers

Image Layers

1ADD file ... in / 52.37 MB
2CMD ["bash"]0 B
3/bin/sh -c set -eux; apt-get4.91 MB
4/bin/sh -c set -ex; if10.37 MB
5/bin/sh -c apt-get update &&52.04 MB
6/bin/sh -c set -ex; apt-get187.41 MB
7ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
8ENV LANG=C.UTF-80 B
9/bin/sh -c apt-get update &&6 MB
10ENV GPG_KEY=0D96DF4D4110E5C43FBFB17F2D347EA6AA65421D0 B
11ENV PYTHON_VERSION=3.6.150 B
12/bin/sh -c set -ex &&13.55 MB
13/bin/sh -c cd /usr/local/bin &&235 B
14ENV PYTHON_PIP_VERSION=21.2.40 B
15ENV PYTHON_SETUPTOOLS_VERSION=57.5.00 B
16ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/3cb8888cc2869620f57d5d2da64da38f516078c7/public/get-pip.py0 B
17ENV PYTHON_GET_PIP_SHA256=c518250e91a70d7b20cceb15272209a4ded2a0c263ae5776f129e0d9b56743090 B
18/bin/sh -c set -ex; wget2.11 MB
19CMD ["python3"]0 B
20VOLUME [/logs]0 B
21VOLUME [/out]0 B
22ENV WORKSPACE=/opt/VFB0 B
23ENV VALIDATE=true0 B
24ENV VALIDATESHEX=true0 B
25ENV VALIDATESHACL=true0 B
26ENV SPARQL_ENDPOINT=http://ts.p2.virtualflybrain.org/rdf4j-server/repositories/vfb0 B
27ENV VFB_CONFIG=http://virtualflybrain.org/config/neo4j2owl-config.yaml0 B
28ENV PATH=/opt/VFB/:/opt/VFB/shacl/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
29RUN /bin/sh -c pip3 install60.61 MB
30RUN /bin/sh -c apt-get -qq254.98 MB
31RUN /bin/sh -c mkdir $WORKSPACE112 B
32ENV ROBOT=v1.8.30 B
33ENV ROBOT_ARGS=-Xmx20G0 B
34ARG ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar0 B
35ENV ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar0 B
36RUN |1 ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar /bin/sh -c69.87 MB
37ENV SHACL_VERSION=1.3.20 B
38ARG SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip0 B
39ENV SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip0 B
40RUN |2 ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip /bin/sh13.63 MB
41ENV STDOUT_FILTER=| { grep -v0 B
42ENV INFER_ANNOTATE_RELATION=http://n2o.neo/property/nodeLabel0 B
43ENV UNIQUE_FACETS_ANNOTATION=http://n2o.neo/property/uniqueFacets0 B
44COPY process.sh /opt/VFB/process.sh # buildkit534 B
45COPY dumps.Makefile /opt/VFB/Makefile # buildkit2.83 KB
46RUN |2 ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip /bin/sh529 B
47COPY /sparql /opt/VFB/sparql # buildkit2.12 KB
48COPY /scripts /opt/VFB/scripts # buildkit3.43 KB
49ENV NEO4J2OWL_VERSION=1.2.2-PRE0 B
50ARG OWL2NEO4J_JAR=https://github.com/VirtualFlyBrain/neo4j2owl/releases/download/1.2.2-PRE/owl2neo4jcsv.jar0 B
51ENV OWL2NEO4J_JAR=https://github.com/VirtualFlyBrain/neo4j2owl/releases/download/1.2.2-PRE/owl2neo4jcsv.jar0 B
52RUN |3 ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip OWL2NEO4J_JAR=https://github.com/VirtualFlyBrain/neo4j2owl/releases/download/1.2.2-PRE/owl2neo4jcsv.jar17.78 MB
53ENV INFER_ANNOTATE_VERSION=0.0.1-PRE0 B
54ARG INFER_ANNOTATE_JAR=https://github.com/VirtualFlyBrain/vfb_expression_annotator/releases/download/0.0.1-PRE/infer-annotate.jar0 B
55ENV INFER_ANNOTATE_JAR=https://github.com/VirtualFlyBrain/vfb_expression_annotator/releases/download/0.0.1-PRE/infer-annotate.jar0 B
56RUN |4 ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip OWL2NEO4J_JAR=https://github.com/VirtualFlyBrain/neo4j2owl/releases/download/1.2.2-PRE/owl2neo4jcsv.jar13.47 MB
57RUN |4 ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip OWL2NEO4J_JAR=https://github.com/VirtualFlyBrain/neo4j2owl/releases/download/1.2.2-PRE/owl2neo4jcsv.jar346.16 KB
58CMD ["/opt/VFB/process.sh"]0 B

Command

ADD file:c03517c5ddbed4053165bfdf984b27a006fb5f533ca80b5798232d96df221440 in /