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virtualflybrain/vfb-pipeline-dumps:jars_refactor

Manifest digest

sha256:4bdda8ca2aab3c73f8e8e09c85af9f430f0c44ae4cf53bd042d94d3ac71d7c95

OS/ARCH

linux/amd64

Compressed size

893.55 MB

Last pushed

over 3 years by rcourt

Type

Image

Manifest digest

sha256:4bdda8ca2aab3c73f8e8e09c85af9f430f0c44ae4cf53bd042d94d3ac71d7c95

Image Layers

Image Layers

1ADD file ... in / 52.37 MB
2CMD ["bash"]0 B
3/bin/sh -c set -eux; apt-get4.91 MB
4/bin/sh -c set -ex; if10.37 MB
5/bin/sh -c apt-get update &&52.04 MB
6/bin/sh -c set -ex; apt-get187.41 MB
7ENV PATH=/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
8ENV LANG=C.UTF-80 B
9/bin/sh -c apt-get update &&6 MB
10ENV GPG_KEY=0D96DF4D4110E5C43FBFB17F2D347EA6AA65421D0 B
11ENV PYTHON_VERSION=3.6.150 B
12/bin/sh -c set -ex &&13.55 MB
13/bin/sh -c cd /usr/local/bin &&235 B
14ENV PYTHON_PIP_VERSION=21.2.40 B
15ENV PYTHON_SETUPTOOLS_VERSION=57.5.00 B
16ENV PYTHON_GET_PIP_URL=https://github.com/pypa/get-pip/raw/3cb8888cc2869620f57d5d2da64da38f516078c7/public/get-pip.py0 B
17ENV PYTHON_GET_PIP_SHA256=c518250e91a70d7b20cceb15272209a4ded2a0c263ae5776f129e0d9b56743090 B
18/bin/sh -c set -ex; wget2.11 MB
19CMD ["python3"]0 B
20VOLUME [/logs]0 B
21VOLUME [/out]0 B
22ENV WORKSPACE=/opt/VFB0 B
23ENV VALIDATE=true0 B
24ENV VALIDATESHEX=true0 B
25ENV VALIDATESHACL=true0 B
26ENV SPARQL_ENDPOINT=http://ts.p2.virtualflybrain.org/rdf4j-server/repositories/vfb0 B
27ENV VFB_CONFIG=http://virtualflybrain.org/config/neo4j2owl-config.yaml0 B
28ENV PATH=/opt/VFB/:/opt/VFB/shacl/bin:/usr/local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
29/bin/sh -c pip3 install wheel60.24 MB
30/bin/sh -c apt-get -qq update389.57 MB
31/bin/sh -c mkdir $WORKSPACE111 B
32ENV ROBOT=v1.8.30 B
33ENV ROBOT_ARGS=-Xmx20G0 B
34ARG ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar0 B
35ENV ROBOT_JAR=https://github.com/ontodev/robot/releases/download/v1.8.3/robot.jar0 B
36/bin/sh -c wget $ROBOT_JAR -O69.87 MB
37ENV SHACL_VERSION=1.3.20 B
38ARG SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip0 B
39ENV SHACL_ZIP=https://repo1.maven.org/maven2/org/topbraid/shacl/1.3.2/shacl-1.3.2-bin.zip0 B
40/bin/sh -c wget $SHACL_ZIP -O13.63 MB
41ENV STDOUT_FILTER=| { grep0 B
42ENV INFER_ANNOTATE_RELATION=http://n2o.neo/property/nodeLabel0 B
43ENV UNIQUE_FACETS_ANNOTATION=http://n2o.neo/property/uniqueFacets0 B
44COPY file:cf3dbb33b1bb86b5fdac81dd043b2f6cc3f4f281bc524b6bd637f367be9d6c99 in /opt/VFB/process.sh 522 B
45COPY file:66649a660ab050f296f65c0fe17f991fe7392683fc123be4cbad1549c29eaffd in /opt/VFB/Makefile 2.37 KB
46/bin/sh -c chmod +x $WORKSPACE/process.sh520 B
47COPY dir:60d973b63b64dd7c3bdb15af8ad05068547da348d10ad670233caad529497be0 in /opt/VFB/sparql 2.05 KB
48COPY dir:e287f24f52c2c9fb0b9fed3755756ec405fec493c95d07d1f7d570ba0ba6571b in /opt/VFB/scripts 2.58 KB
49ENV NEO4J2OWL_VERSION=1.1.24-PRE0 B
50ARG OWL2NEO4J_JAR=https://github.com/VirtualFlyBrain/neo4j2owl/releases/download/1.1.24-PRE/owl2neo4jcsv.jar0 B
51ENV OWL2NEO4J_JAR=https://github.com/VirtualFlyBrain/neo4j2owl/releases/download/1.1.24-PRE/owl2neo4jcsv.jar0 B
52/bin/sh -c wget $OWL2NEO4J_JAR -O17.65 MB
53ENV INFER_ANNOTATE_VERSION=0.0.1-PRE0 B
54ARG INFER_ANNOTATE_JAR=https://github.com/VirtualFlyBrain/vfb_expression_annotator/releases/download/0.0.1-PRE/infer-annotate.jar0 B
55ENV INFER_ANNOTATE_JAR=https://github.com/VirtualFlyBrain/vfb_expression_annotator/releases/download/0.0.1-PRE/infer-annotate.jar0 B
56/bin/sh -c wget $INFER_ANNOTATE_JAR -O13.47 MB
57/bin/sh -c apt-get -y update335.66 KB
58CMD ["/opt/VFB/process.sh"]0 B

Command

ADD file:c03517c5ddbed4053165bfdf984b27a006fb5f533ca80b5798232d96df221440 in /