Sign inSign up

biodckrdev/bior_annotate:2.1.1

Manifest digest

sha256:508c5a89a3e8069a54f4c1a5f1e72ae0c8305fe105c0d32c38e6f04d73e96ebc

OS/ARCH

linux/amd64

Compressed size

521.37 MB

Last pushed

about 10 years by biodckrdev

Type

Image

Manifest digest

sha256:508c5a89a3e8069a54f4c1a5f1e72ae0c8305fe105c0d32c38e6f04d73e96ebc

Image Layers

Image Layers

1ADD file ... in /47.43 MB
2/bin/sh -c set -xe &&823 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*446 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'678 B
5/bin/sh -c mkdir -p /run/systemd160 B
6CMD ["/bin/bash"]0 B
7ENV DEBIAN_FRONTEND=noninteractive0 B
8/bin/sh -c mv /etc/apt/sources.list /etc/apt/sources.list.bkp777 B
9/bin/sh -c apt-get clean all241.25 MB
10/bin/sh -c echo 'export PATH=/opt/conda/bin:$PATH'30.8 MB
11/bin/sh -c TINI_VERSION=`curl https://github.com/krallin/tini/releases/latest |457.23 KB
12/bin/sh -c mkdir /data /config111 B
13/bin/sh -c groupadd fuse &&4.53 KB
14/bin/sh -c chmod 777 -R58.81 MB
15USER [biodocker]0 B
16ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin0 B
17ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin0 B
18ENV HOME=/home/biodocker0 B
19/bin/sh -c mkdir /home/biodocker/bin146 B
20/bin/sh -c conda config --add7.13 KB
21/bin/sh -c conda config --add201 B
22/bin/sh -c conda upgrade conda36.17 MB
23VOLUME [/data /config]0 B
24CMD ["/bin/bash"]0 B
25WORKDIR /data0 B
26MAINTAINER Felipe da Veiga0 B
27USER [root]0 B
28/bin/sh -c apt-get update &&827.5 KB
29ENV ZIP=htslib-1.2.1.tar.bz20 B
30ENV URL=https://github.com/BioDocker/software-archive/releases/download/htslib0 B
31ENV FOLDER=htslib-1.2.10 B
32ENV DST=/tmp0 B
33/bin/sh -c wget $URL/$ZIP -O3.82 MB
34ENV ZIP=samtools-1.2.tar.bz20 B
35ENV URL=https://github.com/BioDocker/software-archive/releases/download/samtools0 B
36ENV FOLDER=samtools-1.20 B
37ENV DST=/tmp0 B
38/bin/sh -c wget $URL/$ZIP -O1.31 MB
39ENV ZIP=bedtools-2.25.0.tar.gz0 B
40ENV URL=https://github.com/arq5x/bedtools2/releases/download/v2.25.00 B
41ENV FOLDER=bedtools20 B
42ENV DST=/tmp0 B
43/bin/sh -c wget $URL/$ZIP -O789.45 KB
44/bin/sh -c cpan -i Data::Dumper12.01 MB
45/bin/sh -c pip install pysam==0.8.38.55 MB
46USER [biodocker]0 B
47ENV ZIP=cava-full-v1.1.1.tgz0 B
48ENV URL=https://github.com/BioDocker/software-archive/releases/download/cava0 B
49ENV FOLDER=cava-v1.1.10 B
50ENV DST=/home/biodocker/bin0 B
51/bin/sh -c wget $URL/$ZIP -O0 B
52ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin:/home/biodocker/bin/cava-v1.1.1/0 B
53ENV ZIP=snpEff_v4_1k_core.zip0 B
54ENV URL=https://github.com/BioDocker/software-archive/releases/download/snpEff0 B
55ENV FOLDER=snpEff0 B
56ENV DST=/home/biodocker/bin0 B
57/bin/sh -c wget $URL/$ZIP -O44.69 MB
58ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin:/home/biodocker/bin/cava-v1.1.1/:/home/biodocker/bin/snpEff/scripts:/home/biodocker/bin/snpEff/scripts/gsa0 B
59ENV ZIP=bior_2.1.1.tar.gz0 B
60ENV URL=https://github.com/BioDocker/software-archive/releases/download/BioR0 B
61ENV FOLDER=bior_2.1.10 B
62ENV DST=/home/biodocker/bin0 B
63/bin/sh -c wget $URL/$ZIP -O34.46 MB
64ENV BASEDIR=/home/biodocker/bin/bior_2.1.10 B
65ENV FOLDER=/home/biodocker/bin/bior_2.1.10 B
66ENV BIOR_LITE_HOME=/home/biodocker/bin/bior_2.1.10 B
67ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin:/home/biodocker/bin/cava-v1.1.1/:/home/biodocker/bin/snpEff/scripts:/home/biodocker/bin/snpEff/scripts/gsa:/home/biodocker/bin/bior_2.1.1/bin0 B
68COPY dir:46ee7f32cae9c4b1051b1f5a996e42ae380ecc973ab855249a4b6a64b1e837a3 in /home/biodocker/bin/annnotate/ 40.86 KB
69ENV PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/conda/bin:/home/biodocker/bin:/home/biodocker/bin/cava-v1.1.1/:/home/biodocker/bin/snpEff/scripts:/home/biodocker/bin/snpEff/scripts/gsa:/home/biodocker/bin/bior_2.1.1/bin:/home/biodocker/bin/annnotate/scripts/0 B
70WORKDIR /data0 B
71CMD ["bash"]0 B
72MAINTAINER Saulo Alves Aflitos0 B

Command

ADD file:902bff94e00fb3d9ebb11dc5000a0f0f2400885c56f4fbfb00de394534e282f7 in /