bigbio

Tools (written in C using htslib) for manipulating next-generation sequencing data

An ultrafast memory-efficient short read aligner

Genetic variant annotation and effect prediction toolbox.

fast, embeddable genome browser built completely with JavaScript and HTML5

de novo sequence assembler using string graphs http://genome.cshlp.org/content/22/3/549

RAPID, FLEXIBLE SYSTEM FOR GENOMIC ANNOTATION (BIOLOGICAL REFERENCE REPOSITORY)

Computes FRC from SAM/BAM file and not from afg files

C library for high-throughput sequencing data formats

a correction tool for SOAPdenovo

single variant analysis, generating summary statistics for gene level meta analyses

short-read assembly method that can build a de novo draft assembly for the human-sized genomes

Short read de novo assembler using de Bruijn graphs

A fast multi-threaded k-mer counter

a tool for Genome-wide Complex Trait Analysis

repository that contains several programs that perform operations on SAM/BAM files

The Genome Analysis Toolkit is a software package to analyze high-throughput sequencing data.

Genome variant discovery through assembly

DISCOVAR is a new variant caller

sandbox