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broadinstitute/dig-loam:ensemblvep_r109

Manifest digest

sha256:0edb2dc4eb99b9b4582036d811f70a350c8d942651d526ad648d31d0d320ca52

OS/ARCH

linux/amd64

Compressed size

320.6 MB

Last pushed

almost 4 years by ryankbroad

Type

Image

Manifest digest

sha256:0edb2dc4eb99b9b4582036d811f70a350c8d942651d526ad648d31d0d320ca52

Image Layers

Image Layers

1ADD file ... in / 25.47 MB
2CMD ["bash"]0 B
3RUN /bin/sh -c apt-get update100 MB
4ENV OPT=/opt/vep0 B
5ENV OPT_SRC=/opt/vep/src0 B
6ENV PERL5LIB_TMP=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B
7ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/opt/vep/src/bioperl-live0 B
8ENV KENT_SRC=/opt/vep/src/kent-335_base/src0 B
9ENV HTSLIB_DIR=/opt/vep/src/htslib0 B
10ENV MACHTYPE=x86_640 B
11ENV DEPS=/opt/vep/src0 B
12ENV PATH=/opt/vep/src/ensembl-vep:/opt/vep/src/var_c_code:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13ENV LANG_VAR=en_US.UTF-80 B
14RUN /bin/sh -c useradd -r4.37 KB
15USER vep0 B
16COPY /opt/vep/src /opt/vep/src # buildkit71.2 MB
17USER root0 B
18WORKDIR /opt/vep/src/bioperl-ext/Bio/Ext/Align/32 B
19RUN /bin/sh -c perl Makefile.PL1.15 MB
20WORKDIR /opt/vep/src/ensembl-xs32 B
21RUN /bin/sh -c perl Makefile.PL443.32 KB
22WORKDIR /opt/vep/src32 B
23RUN /bin/sh -c ensembl-vep/travisci/build_c.sh &&55.44 MB
24ENV LC_ALL=en_US.UTF-80 B
25ENV LANG=en_US.UTF-80 B
26USER vep0 B
27ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules0 B
28WORKDIR /opt/vep/src/ensembl-vep32 B
29RUN /bin/sh -c echo >>4.21 MB
30USER root0 B
31RUN /bin/sh -c apt-get update19.26 MB
32WORKDIR /opt/samtools149 B
33RUN /bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.16.1/samtools-1.16.1.tar.bz240.37 MB
34WORKDIR /opt32 B
35RUN /bin/sh -c git clone3.06 MB
36ENV PERL5LIB=:/opt/vep/src/ensembl-vep:/opt/vep/src/ensembl-vep/modules:/usr/local/bin/loftee0 B
37USER vep0 B

Command

ADD file:ed601c56cf74241eeb1971b24ed969fb855cd2b9330276d3c5779ecdb0b28364 in /