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broadinstitute/gtex_rnaseq:V10pg

Manifest digest

sha256:cee65cc83760f2f3f31c579585391f590d22b202c36329b11a2a619a84cb8a89

OS/ARCH

linux/amd64

Compressed size

1.17 GB

Last pushed

almost 3 years by francois4

Type

Image

Manifest digest

sha256:cee65cc83760f2f3f31c579585391f590d22b202c36329b11a2a619a84cb8a89

Image Layers

Image Layers

1ARG RELEASE0 B
2ARG LAUNCHPAD_BUILD_ARCH0 B
3LABEL org.opencontainers.image.ref.name=ubuntu0 B
4LABEL org.opencontainers.image.version=22.040 B
5ADD file ... in / 28.17 MB
6CMD ["/bin/bash"]0 B
7MAINTAINER Francois Aguet0 B
8RUN /bin/sh -c apt-get update418.81 MB
9RUN /bin/sh -c cd /opt15.11 MB
10RUN /bin/sh -c cd /opt18.41 MB
11RUN /bin/sh -c cd /opt12.09 MB
12ENV PATH=/opt/STAR-2.7.11a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
13RUN /bin/sh -c cd /opt22.01 MB
14ENV PATH=/opt/RSEM-1.3.3:/opt/STAR-2.7.11a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
15RUN /bin/sh -c cd /opt1.63 MB
16ENV LD_LIBRARY_PATH=/usr/local/lib/bamtools:0 B
17COPY bamsync /opt/bamsync # buildkit14.82 KB
18RUN /bin/sh -c cd /opt/bamsync46.13 KB
19ENV PATH=/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.11a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
20RUN /bin/sh -c mkdir /opt/picard-tools15.32 MB
21RUN /bin/sh -c cd /opt4.48 MB
22ENV PATH=/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.11a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/kallisto_linux-v0.50.10 B
23RUN /bin/sh -c cd /opt33.23 MB
24RUN /bin/sh -c mkdir /opt/ucsc5.83 MB
25ENV PATH=/opt/ucsc:/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.11a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/kallisto_linux-v0.50.10 B
26RUN /bin/sh -c pip3 install7.91 MB
27RUN /bin/sh -c pip3 install287.24 MB
28RUN /bin/sh -c pip3 install423.4 KB
29RUN /bin/sh -c cd /opt19.39 MB
30ENV PATH=/opt/FastQC-0.11.9:/opt/ucsc:/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.11a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/kallisto_linux-v0.50.10 B
31RUN /bin/sh -c mkdir /opt/rnaseqc3.3 MB
32RUN /bin/sh -c pip3 install20.19 MB
33ENV PATH=/opt/rnaseqc:/opt/FastQC-0.11.9:/opt/ucsc:/opt/bamsync:/opt/RSEM-1.3.3:/opt/STAR-2.7.11a/bin/Linux_x86_64_static:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/kallisto_linux-v0.50.10 B
34RUN /bin/sh -c apt-get update32.29 MB
35RUN /bin/sh -c echo "deb253.01 MB
36COPY src src/ # buildkit12.13 KB

Command

 ARG RELEASE