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johnegarza/vep-nonlocal:latest

Manifest digest

sha256:a6d94a0189334657b3bbb25e23d3d4a30bdb753a3021404cbabb6a17eb0a8812

OS/ARCH

linux/amd64

Compressed size

662.37 MB

Last pushed

about 8 years by johnegarza

Type

Image

Manifest digest

sha256:a6d94a0189334657b3bbb25e23d3d4a30bdb753a3021404cbabb6a17eb0a8812

Image Layers

Image Layers

1ADD file ... in / 41.25 MB
2/bin/sh -c set -xe &&846 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*615 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'850 B
5/bin/sh -c mkdir -p /run/systemd168 B
6CMD ["/bin/bash"]0 B
7/bin/sh -c apt-get update &&180.54 MB
8/bin/sh -c cpanm DBI DBD::mysql4.51 MB
9/bin/sh -c useradd -r -m4.4 KB
10/bin/sh -c usermod -a -G1.35 KB
11USER vep0 B
12ENV OPT=/opt/vep0 B
13WORKDIR /opt/vep0 B
14/bin/sh -c mkdir -p src136 B
15WORKDIR /opt/vep/src0 B
16/bin/sh -c git clone https://github.com/Ensembl/ensembl.git61.49 MB
17/bin/sh -c git clone https://github.com/Ensembl/ensembl-vep.git112.52 MB
18WORKDIR /opt/vep/src0 B
19/bin/sh -c ensembl-vep/travisci/get_dependencies.sh185.37 MB
20ENV PERL5LIB=:/opt/vep/src/bioperl-live-release-1-6-9240 B
21ENV KENT_SRC=/opt/vep/src/kent-335_base/src0 B
22ENV HTSLIB_DIR=/opt/vep/src/htslib0 B
23ENV MACHTYPE=x86_640 B
24ENV CFLAGS=-fPIC0 B
25ENV DEPS=/opt/vep/src0 B
26USER root0 B
27/bin/sh -c ensembl-vep/travisci/build_c.sh17.69 MB
28WORKDIR /opt/vep/src/htslib0 B
29/bin/sh -c make install4.27 MB
30WORKDIR /opt/vep/src0 B
31/bin/sh -c git clone https://github.com/bioperl/bioperl-ext.git1.26 MB
32WORKDIR /opt/vep/src/bioperl-ext/Bio/Ext/Align0 B
33/bin/sh -c perl -pi -e"s|(cd710 B
34/bin/sh -c perl Makefile.PL8.59 KB
35/bin/sh -c make804.51 KB
36/bin/sh -c make install322.1 KB
37WORKDIR /opt/vep/src0 B
38/bin/sh -c wget https://github.com/Ensembl/ensembl-xs/archive/2.3.2.zip -O96.57 KB
39/bin/sh -c unzip -q ensembl-xs.zip75.58 KB
40/bin/sh -c mv ensembl-xs-2.3.2 ensembl-xs75.61 KB
41/bin/sh -c rm ensembl-xs.zip184 B
42WORKDIR /opt/vep/src/ensembl-xs0 B
43/bin/sh -c perl Makefile.PL18.98 KB
44/bin/sh -c make313.88 KB
45/bin/sh -c make install83.17 KB
46WORKDIR /opt/vep/src0 B
47/bin/sh -c cpanm --installdeps --with-recommends13.75 MB
48/bin/sh -c cpanm --installdeps --with-recommends21.95 MB
49/bin/sh -c echo "en_US.UTF-8 UTF-8"414.64 KB
50ENV LC_ALL=en_US.UTF-80 B
51ENV LANG=en_US.UTF-80 B
52USER vep0 B
53/bin/sh -c echo >> $OPT/.profile563 B
54ENV PATH=/opt/vep/src/ensembl-vep:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B
55WORKDIR /opt/vep/src/ensembl-vep0 B
56/bin/sh -c chmod u+x *.pl19.95 KB
57/bin/sh -c ./INSTALL.pl -a a14.92 MB
58MAINTAINER John Garza <[email protected]>0 B
59LABEL description=Vep helper image0 B
60USER root0 B
61/bin/sh -c apt-get update -y688.09 KB
62WORKDIR /0 B
63/bin/sh -c ln -s /opt/vep/src/ensembl-vep/vep185 B
64WORKDIR /opt/vep/src/ensembl-vep0 B
65/bin/sh -c perl INSTALL.pl --NO_UPDATE170 B
66/bin/sh -c mkdir -p /opt/lib/perl/VEP/Plugins169 B
67WORKDIR /opt/lib/perl/VEP/Plugins0 B
68/bin/sh -c wget https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/Downstream.pm2.16 KB
69/bin/sh -c wget https://raw.githubusercontent.com/griffithlab/pVACtools/master/tools/pvacseq/VEP_plugins/Wildtype.pm1.08 KB
70COPY file:78fde7a92dd8a3dae8640e671cb12ece647e20d1a436e7faf6d1c2fb76909566 in /usr/bin/add_annotations_to_table_helper.py 1.53 KB
71COPY file:ccddec852ac10c36eb8600a71b6aef3323bb47e46aab6d7b21a68d82de63139d in /usr/bin/docm_and_coding_indel_selection.pl 1.1 KB
72COPY file:45a10e583d0e9058a005278434871086e8b7865cd478b4245e834a347c35627e in /usr/bin/vcf_check.pl 939 B
73COPY file:5c2f6d8f8546bfef82dbb9a4d191450f9e4b25fc5a2ed71bb7f6496530f70b13 in /usr/bin/intervals_to_bed.pl 321 B
74COPY file:4d57a807048a846e9360d8f20bdbafd9b9248d8796a67455fd5ec91673f52f99 in /usr/bin/single_sample_docm_filter.pl 600 B
75USER vep0 B

Command

ADD file:a83ab1826f43e88bc0d3ab6230f14cb9b2dacab70c762c3bfc555eda733b292c in /