mgibio/gatk:v3.5-realigner-target-creator

Manifest digest

sha256:5294a40ac4f232906d492a34cf437b71123f33531062bb5dd0193601032ac31f

OS/ARCH

linux/amd64

Compressed size

393.8 MB

Last pushed

3 months by ebelter

Type

Image

Manifest digest

sha256:5294a40ac4f232906d492a34cf437b71123f33531062bb5dd0193601032ac31f

Image Layers

1ADD file ... in / 48.99 MB

2CMD ["/bin/bash"]0 B

3/bin/sh -c apt-get update &&17.67 MB

4/bin/sh -c apt-get update &&553.61 KB

5/bin/sh -c echo 'deb http://httpredir.debian.org/debian218 B

6ENV LANG=C.UTF-80 B

7/bin/sh -c { echo '#!/bin/sh';242 B

8ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/jre0 B

9ENV JAVA_VERSION=8u1020 B

10ENV JAVA_DEBIAN_VERSION=8u102-b14.1-1~bpo8+10 B

11ENV CA_CERTIFICATES_JAVA_VERSION=201403240 B

12/bin/sh -c set -x &&50.93 MB

13/bin/sh -c /var/lib/dpkg/info/ca-certificates-java.postinst configure277.59 KB

14MAINTAINER DSDE <[email protected]>0 B

15ENV TERM=xterm-256color0 B

16ENV DOCKER_FIX=0 B

17LABEL GATK_VER=3.5-00 B

18WORKDIR /usr0 B

19/bin/sh -c apt-get update &&217.66 MB

20/bin/sh -c echo "r <-213 B

21/bin/sh -c Rscript -e "install.packages('gsalib')"17.54 KB

22/bin/sh -c Rscript -e "install.packages('reshape')"4.09 MB

23/bin/sh -c Rscript -e "install.packages('gplots')"1.91 MB

24/bin/sh -c Rscript -e "install.packages('ggplot2')"24.32 MB

25COPY file:340d9c47fdfa758e0d106742c1002ea5f300a12509e538d076cd0df878042946 in /usr/GenomeAnalysisTK.jar 11.41 MB

26LABEL [email protected]0 B

27WORKDIR /usr/local/bin32 B

28RUN /bin/sh -c wget https://github.com/arq5x/bedtools2/releases/download/v2.31.0/bedtools.static15.99 MB

29WORKDIR /0 B

Command

ADD file:f2453b914e7e026efd39c6321c7b14509b6d09dd3cf5567a8f6bd38466e06954 in /