mgibio/varscan_helper-cwl:1.0.0

Languages & frameworks

Data science

Manifest digest

sha256:ed846786c24132997163a8664028fe5f25cf08d880db613fb380c11fbc7bec87

OS/ARCH

linux/amd64

Compressed size

273.64 MB

Last pushed

about 8 years by mgibio

Type

Image

Manifest digest

sha256:ed846786c24132997163a8664028fe5f25cf08d880db613fb380c11fbc7bec87

Image Layers

1ADD file ... in / 41.23 MB

2/bin/sh -c set -xe &&846 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B

4/bin/sh -c sed -i 's/^#\s*$deb.*universe$$/\1/g'854 B

5/bin/sh -c mkdir -p /run/systemd168 B

6CMD ["/bin/bash"]0 B

7MAINTAINER John Garza <[email protected]>0 B

8LABEL description=Image supporting the0 B

9/bin/sh -c apt-get update -y189.65 MB

10ENV VARSCAN_INSTALL_DIR=/opt/varscan0 B

11WORKDIR /opt/varscan113 B

12/bin/sh -c wget https://github.com/dkoboldt/varscan/releases/download/2.4.2/VarScan.v2.4.2.jar &&111.46 KB

13ENV SAMTOOLS_INSTALL_DIR=/opt/samtools0 B

14WORKDIR /tmp0 B

15/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.7/samtools-1.7.tar.bz2 &&9.06 MB

16WORKDIR /tmp/samtools-1.70 B

17/bin/sh -c ./configure --enable-plugins --prefix=$SAMTOOLS_INSTALL_DIR33.59 MB

18WORKDIR /0 B

19/bin/sh -c ln -s $SAMTOOLS_INSTALL_DIR/bin/samtools204 B

20COPY file:59a94ad94d76c3ab9025a56da68bd4a5f89f1aaae4cceec2b1a9d68fab4f4950 in /usr/bin/varscan_germline_helper.sh 710 B

Command

ADD file:204fb7ccb19ff7e863331131138621ff4d22720b3718e8f296902cc7d4f635b5 in /