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ngchm/ngchm-galaxy:2.3

Integration & delivery
Data science
Manifest digest

sha256:0d7091415d7a708845498f2626c3dee86586c40608b78a407b6d5f45c3039b4a

OS/ARCH

linux/amd64

Compressed size

877.71 MB

Last pushed

over 8 years by rbrown1422

Type

Image

Manifest digest

sha256:0d7091415d7a708845498f2626c3dee86586c40608b78a407b6d5f45c3039b4a

Image Layers

Image Layers

1ADD file ... in / 69.57 MB
2/bin/sh -c set -xe &&70.95 KB
3/bin/sh -c rm -rf /var/lib/apt/lists/*629 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'851 B
5/bin/sh -c mkdir -p /run/systemd164 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Björn A. Grüning,0 B
8ENV DEBIAN_FRONTEND=noninteractive0 B
9/bin/sh -c apt-get -qq update183.11 MB
10MAINTAINER Björn A. Grüning,0 B
11ARG GALAXY_RELEASE0 B
12ARG GALAXY_REPO0 B
13ENV GALAXY_RELEASE=release_17.09 GALAXY_REPO=https://github.com/galaxyproject/galaxy GALAXY_ROOT=/galaxy-central0 B
14ENV GALAXY_CONFIG_FILE=/etc/galaxy/galaxy.ini GALAXY_CONFIG_JOB_CONFIG_FILE=/etc/galaxy/job_conf.xml GALAXY_CONFIG_JOB_METRICS_CONFIG_FILE=/etc/galaxy/job_metrics_conf.xml0 B
15/bin/sh -c locale-gen en_US.UTF-8 &&408.78 KB
16/bin/sh -c groupadd -r postgres2.04 KB
17/bin/sh -c echo "force-unsafe-io" >172.52 MB
18/bin/sh -c groupadd -r $GALAXY_USER21.59 KB
19ADD file ... in /home/galaxy/.bashrc 1.7 KB
20/bin/sh -c mkdir $GALAXY_ROOT &&30.88 MB
21/bin/sh -c su $GALAXY_USER -c22.58 KB
22ADD file ... in /etc/galaxy/reports_wsgi.ini 1.51 KB
23ADD file ... in /home/galaxy/ephemeris/sample_tool_list.yaml 431 B
24ADD dir:f6639835561b70ea0f4e113c3da5128649978af49a06ebfcd33b6aa58d7eae24 in /ansible/roles 46.43 KB
25ADD file ... in /ansible/provision.yml 219 B
26ADD file ... in /ansible/postgresql_provision.yml 350 B
27/bin/sh -c ansible-playbook /ansible/postgresql_provision.yml &&111.41 MB
28/bin/sh -c mkdir /shed_tools &&182 B
29USER [galaxy]0 B
30WORKDIR /galaxy-central0 B
31ENV GALAXY_CONFIG_DATABASE_CONNECTION=postgresql://galaxy:galaxy@localhost:5432/galaxy?client_encoding=utf8 [email protected] GALAXY_CONFIG_MASTER_API_KEY=HSNiugRFvgT574F43jZ7N9F30 B
32ADD file ... in /etc/galaxy/web/welcome_image.png 49.54 KB
33ADD file ... in /etc/galaxy/web/welcome.html 1.06 KB
34/bin/sh -c ./scripts/common_startup.sh && 48.69 MB
35/bin/sh -c /tool_deps/_conda/bin/conda create -y49.25 MB
36USER [root]0 B
37ADD file ... in /usr/local/bin/setup_postgresql.py 1.27 KB
38/bin/sh -c rm $PG_DATA_DIR_DEFAULT -rf7.25 MB
39ADD file ... in /home/galaxy/tool_sheds_conf.xml 348 B
40ADD file ... in /usr/bin/install-tools 901 B
41ADD file ... in /usr/bin/install-biojs 338 B
42/bin/sh -c chmod +x /usr/bin/install-tools1.03 KB
43/bin/sh -c echo "DISCARD_SESSION_KEYRING_ON_STARTUP=False" >224 B
44ENV GALAXY_CONFIG_INTEGRATED_TOOL_PANEL_CONFIG=/export/galaxy-central/integrated_tool_panel.xml0 B
45EXPOSE 21/tcp0 B
46EXPOSE 80/tcp0 B
47EXPOSE 443/tcp0 B
48EXPOSE 8800/tcp0 B
49EXPOSE 9002/tcp0 B
50VOLUME [/export/ /data/ /var/lib/docker]0 B
51ADD file ... in /usr/bin/install_db.sh 261 B
52/bin/sh -c chmod +x /usr/bin/install_db.sh324 B
53CMD ["/usr/bin/startup"]0 B
54/bin/sh -c apt-get update20.04 MB
55/bin/sh -c apt-get install -y75.06 MB
56/bin/sh -c apt-get install -y2.38 MB
57/bin/sh -c add-apt-repository -y ppa:openjdk-r/ppa1.82 KB
58/bin/sh -c apt-get update20.05 MB
59/bin/sh -c apt-get install -y66.38 MB
60/bin/sh -c update-alternatives --set java4.9 KB
61ADD multi:31a9fa6441aab3ea8f4e8a0476f50e429b3193feef00eb70c6430a24f9a04c02 in /galaxy-central/tools/Heat_Map_Creation/ 7.82 KB
62ADD file ... in /galaxy-central/tools/Heat_Map_Creation/ 9.16 MB
63/bin/sh -c chmod +x /galaxy-central/tools/Heat_Map_Creation/178 B
64/bin/sh -c chmod 777 /galaxy-central/tools/Heat_Map_Creation178 B
65COPY dir:6a61ca83677d79200c794d5390a30e0803151452a5587fbd0b47f0419119656f in /galaxy-central/config/plugins/visualizations/mda_heatmap_viz/ 906.96 KB
66/bin/sh -c chmod 777 /galaxy-central/config/plugins/visualizations/mda_heatmap_viz/226 B
67ADD multi:1a498fe1a38f205b3a54caad3c2d54207303c55b94c5dbe308d0d034581ce983 in /galaxy-central/tools/Advanced_Heat_Map_Creation/ 6.25 KB
68ADD file ... in /galaxy-central/tools/Advanced_Heat_Map_Creation/ 3.42 KB
69ADD file ... in /galaxy-central/tools/Advanced_Heat_Map_Creation/ 9.16 MB
70/bin/sh -c chmod +x /galaxy-central/tools/Advanced_Heat_Map_Creation/heatmap_advanced.sh1.25 KB
71/bin/sh -c chmod 777 /galaxy-central/tools/Advanced_Heat_Map_Creation188 B
72/bin/sh -c sed -i '/<toolbox1.36 KB
73/bin/sh -c chmod -777 49.55 KB
74COPY file:7911ddeb5e5672deb906683fa90cc2b271d861687acc96d492f0bbef20418898 in /etc/galaxy/web/welcome_image.png 226.05 KB
75/bin/sh -c chmod 777 /galaxy-central/static139 B
76ADD file ... in /galaxy-central/test-data/ 405.74 KB
77ADD file ... in /galaxy-central/test-data/ 1.1 KB
78ADD file ... in /galaxy-central/test-data/ 1.23 KB
79ADD file ... in /galaxy-central/test-data/ 589.03 KB

Command

ADD file:636a7d1b374fb6ccd672a92e56b1e811652a0bf56d64a2d08282850110db548f in /