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alesssia/yampdocker

By alesssia

•Updated about 8 years ago

Docker container for YAMP (https://github.com/alesssia/YAMP)

Image
1

906

alesssia/yampdocker repository overview

This Docker image, based on Alpine Linux 3.7, includes conda-based installation of all the pieces of software used by YAMP (Yet Another Metagenomic Pipeline), namely:

  • bbmap v37.10
  • fastqc v0.11.5
  • metaphlan2 v2.6.0
  • qiime v1.9.1
  • humann2 v0.9.9
  • AWS CLI

Tag summary

Content type

Image

Digest

Size

2.9 GB

Last updated

about 8 years ago

docker pull alesssia/yampdocker