andrewyatz/ensembl-species-search repository overview

⁠Ensembl Species Search REST API with DuckDB and SQLite

This project provides a basic REST API that interacts with a DuckDB and SQLite database to find genomes and species hosted in Ensembl.

⁠Running the web app

When running you can navigate to http://127.0.0.1:8000⁠ to find the main interface or http://127.0.0.1:8000/docs⁠ to access the OpenAPI docs.

⁠Running the Docker image

docker run --detach --name ensembl-species-search --publish 8000:80 andrewyatz/ensembl-species-search:1.0.0

Once finished stop the container like so.

docker stop --timeout 5 ensembl-species-search