bgruening/galaxy-exome-seq repository overview

⁠Galaxy Image for Exome sequencing analysis

:whale: Galaxy Docker repository for Exome sequencing data analysis (Galaxy exome sequencing flavor)

⁠Installed tools

• bowtie2⁠
• deepTools⁠
• BWA⁠
• Bowtie2⁠
• SNPEff⁠
• FASTQC⁠
• SAMTools⁠
• FreeBayes⁠
• GEMINI⁠
• BEDtools⁠

⁠Requirements

• Docker⁠ for Linux / Windows / OSX
• Kitematic⁠ for Windows / OS-X

⁠Usage

To launch:

docker run -d -p 8080:80 -p 8021:21 -p 8022:22 bgruening/galaxy-exome-seq

For more details about this command line or specific usage, please consult the README⁠ of the main Galaxy Docker image, on which the current image is based.

⁠Contributers

• Bjoern Gruening
• Bérénice Batut

⁠Support & Bug Reports

You can file an github issue⁠ or ask us on the Galaxy development list⁠.