bgruening/galaxy-ngs-preprocessing repository overview

⁠Galaxy Workbench for NGS-preprocessing

:whale: Galaxy Docker repository for preprocessing of NGS data

⁠Installed tools

• Bowtie2⁠
• FASTQC⁠
• deepTools⁠
• BWA⁠
• Bowtie2⁠

⁠Requirements

• Docker⁠ for Linux / Windows / OSX
• Kitematic⁠ for Windows / OS-X (Optional)

⁠Usage

To launch:

docker run -i -t -p 8080:80 bgruening/galaxy-ngs-preprocessing

For more details about this command line or specific usage, please consult the README⁠ of the main Galaxy Docker image, on which the current image is based.

⁠Contributers

• Bjoern Gruening
• Bérénice Batut

⁠History

• 0.1: Initial release!

⁠Support & Bug Reports

You can file an github issue⁠ or ask us on the Galaxy development list⁠.