bgruening/galaxy-phylogenetics repository overview

⁠galaxy-phylogenetics

:whale::bar_chart::books: Docker Images for molecular phylogenetics

⁠Galaxy Image for Molecular Phylogenetics

:whale: Galaxy Docker repository for molecular phylogenetics

⁠Installed tools

• Alignements:
  • CLUSTALW⁠
  • MAFFT⁠
  • Muscle⁠
• Phylogeny construction:
  • PhyML⁠
  • RAxML⁠
  • BEAST⁠
• Visualization:
  • GraPhlAn⁠
  • export2graphlan⁠

⁠Requirements

• Docker⁠ for Linux / Windows / OSX
• Kitematic⁠ for Windows / OS-X (optinal)

⁠Usage

To launch:

docker run -i -t -p 8080:80 bgruening/galaxy-phylogenetics

For more details about this command line or specific usage, please consult the README⁠ of the main Galaxy Docker image, on which the current image is based.

⁠Contributers

• Bjoern Gruening
• Bérénice Batut

⁠Support & Bug Reports

You can file an github issue⁠ or ask us on the Galaxy development list⁠.