bgruening/galaxy-rna-seq repository overview

⁠Galaxy RNA-Seq Docker Image

:whale::bar_chart::books: Galaxy Docker Image to analyse RNA-Seq data.

⁠Installed tools

• DESeq2⁠
• htseq-count⁠
• Cufflinks⁠
• bowtie2⁠
• FastQC⁠
• Trim Galore⁠
• TopHat2⁠
• SAM tools⁠
• Trinity⁠
• Sailfish⁠
• STAR⁠
• STAR-fusion⁠

⁠Requirements

• Docker⁠ for Linux / Windows / OSX
• Kitematic⁠ for Windows / OS-X (optional)

⁠Usage

To launch:

docker run -d -p 8080:80 bgruening/galaxy-rna-seq

For more details about this command line or specific usage, please consult the README⁠ of the main Galaxy Docker image, on which the current image is based.

⁠Contributors

• Bjoern Gruening
• Bérénice Batut

⁠Support & Bug Reports

You can file an github issue⁠ or ask us on the Galaxy development list⁠.