bibbox/openspecimen repository overview

⁠OPENSPECIMEN BIBBOX application

⁠Hints

• approx. time with medium fast internet connection: 20 minutes
• level: advanced
• initial user: ** admin **
• initial passwordd: ** Login@123 **

⁠Docker Images Used

• mySQL⁠, offical mySQL container
• busybox⁠, offical data container

⁠Install Environment Variables

• MYSQL_ROOT_PASSWORD = password, only used within the docker container
• MYSQL_DATABASE = name of the mysql database, typical phenotips. The DB file is stored in the mounted volume
• MYSQL_USER = name of the mysql user, typical phenotips
• MYSQL_PASSWORD = mysql user password, only used within the docker container

⁠Mounted Volumes

• the mysql datafolder /var/mysql will be mounted to /opt/apps/INSTANCE_NAME/var/mysql in your BIBBOX kit

⁠Installation Instructions

• start your application in the dashboard

⁠Local Installation

• run docker-compose up in the root folder of the project. After a few minutes OpenSpecimen is reachable via http://localhost:9000/openspecimen⁠ .
• This can be changed in docker-compose.yml.
• the permission of the folder ./data hast to be changed.