What's in the box?
aligners: bwa, snap, mrsfast, bowtie2, novoalign, stampy
| Aligners |
|---|
| bwa |
| snap |
| mrsfast |
| bowtie2 |
| novoalign |
| stampy |
varcallers: freebayes, platypus, VarDict, VarScan, samtools,gatk-hc
| Variant Callers |
|---|
| freebayes |
| platypus |
| VarDict |
| VarScan |
| samtools |
| gatk-hc |
svcallers: lumpy,lumpyexpress,svtyper, cnvkit
| Structural Variant Callers |
|---|
| lumpy |
| lumpyexpress |
| svtyper |
| cnvkit |
realn: abra.jar, glia, ogap
| Re-Aligners |
|---|
| abra |
| glia |
| ogap |
Content type
Image
Digest
sha256:cbd27ad31…
Size
1.2 GB
Last updated
almost 11 years ago
docker pull compbio/ngseasy-box