cookpa/antsct-aging repository overview

⁠antsct-aging

ANTs cortical thickness pipeline container, contains a template for older individuals.

By default, the trim_neck.sh script is called to crop the FOV of the images.

The template is provided by Nick Tustison.

Cortical labels are warped to the subject space after processing, label information, and references / licensing are in the container under template/labels. Or see the template/labels directory in the source on Github.

⁠Included software

ANTs cortical thickness is part of ANTs⁠.

The trim_neck.sh is provided by Paul Yushkevich and Sandhitsu Das, and uses c3d⁠.

⁠References

For ANTs cortical thickness: Tustison, et al 2014⁠.

For c3d: Yushkevich, et al 2006⁠.