cytomine/software_router repository overview

Please see explainations on the cytomine/base⁠ page

⁠Cytomine software router container

The Cytomine software router container (based on cytomine/java7⁠) will be used to run external job (in Python or Groovy) by fetching them to a rabbitmq pool.

⁠Included :

• Anaconda
• pillow
• numpy
• shapely
• opencv
• scipy
• Cytomine-python-datamining⁠
• scikit-learn⁠
• groovy

⁠ENV

• CORE_URL : the url of the core service of Cytomine
• IMS_URLS : the urls of the IMS services of Cytomine
• RABBITMQ_PUB_KEY & RABBITMQ_PRIV_KEY : keys of rabbitmq user
• RABBITMQ_LOGIN & RABBITMQ_PASSWORD : login and password of rabbitmq user

⁠Port

• 8080

⁠Usage

Must be linked to the rabbitmq container.

docker run -d -p 22 --link rabbitmq:rabbitmq \
--name software_router -v $MODELS_PATH:/software_router/algo/models/ \
-e CORE_URL=$CORE_URL \
-e IMS_URLS=$IMS_URLS \
-e RABBITMQ_PUB_KEY=$RABBITMQ_PUB_KEY \
-e RABBITMQ_PRIV_KEY=$RABBITMQ_PRIV_KEY \
-e RABBITMQ_LOGIN=$RABBITMQ_LOGIN \
-e RABBITMQ_PASSWORD=$RABBITMQ_PASSWORD \
cytomine/software_router