Sign inSign up

ersiliaos/eos8jx6

Sponsored OSS

By Ersilia Open Source Initiative

Updated 2 months ago

Ersilia Model Hub Identifier: eos8jx6

Image
0

5.3K

ersiliaos/eos8jx6 repository overview

Antimicrobial activity prediction against Candida albicans from public ChEMBL and PubChem data

Bioactivity prediction of growth inhibition in Candida albicans, trained as binary (active/inactive) classifiers from publicly available data in ChEMBL and PubChem. Independent models are trained on multiple bioactivity datasets, corresponding to single-point (Inhibition) and dose-response (MIC) assays, among others. A ranking score is provided for each model alongside a combined consensus score.

This model was incorporated on 2026-05-19.Last packaged on 2026-07-22.

Information

Identifiers
  • Ersilia Identifier: eos8jx6
  • Slug: antimicrobial-activity-calbicans
Domain
  • Task: Annotation
  • Subtask: Activity prediction
  • Biomedical Area: Candidiasis
  • Target Organism: Candida albicans
  • Tags: Antimicrobial activity, ChEMBL
Input
  • Input: Compound
  • Input Dimension: 1
Output
  • Output Dimension: 18
  • Output Consistency: Fixed
  • Interpretation: Probability of antimicrobial activity against Candida albicans from 17 ChEMBL- and PubChem-trained sub-models, plus a quality-weighted consensus score.

Below are the Output Columns of the model:

NameTypeDirectionDescription
consensus_scorefloathighTanh-transformed quality-weighted consensus probability across the 17 sub-models. Recommended threshold: 0.897.
chembl_single_point_0floathighProbability from sub-model trained on ChEMBL single-point signal-based pool of 174 assays (1717 compounds). Recommended threshold: 0.773.
chembl_single_point_1floathighProbability from sub-model trained on ChEMBL single-point signal-based pool of 69 assays (949 compounds). Recommended threshold: 0.713.
chembl_single_point_2floathighProbability from sub-model trained on ChEMBL single-point signal-based pool of 101 assays (842 compounds). Recommended threshold: 0.614.
chembl_single_point_3floathighProbability from sub-model trained on ChEMBL single-point signal-based pool of 86 assays (695 compounds). Recommended threshold: 0.679.
chembl_single_point_4floathighProbability from sub-model trained on ChEMBL single-point signal-based pool of 82 assays (627 compounds). Recommended threshold: 0.666.
chembl_dose_response_0floathighProbability from sub-model trained on ChEMBL dose-response signal-based pool of 612 assays (7988 compounds). Recommended threshold: 0.782.
chembl_dose_response_1floathighProbability from sub-model trained on ChEMBL dose-response signal-based pool of 628 assays (7670 compounds). Recommended threshold: 0.737.
chembl_dose_response_2floathighProbability from sub-model trained on ChEMBL dose-response signal-based pool of 345 assays (4640 compounds). Recommended threshold: 0.678.
chembl_dose_response_3floathighProbability from sub-model trained on ChEMBL dose-response signal-based pool of 79 assays (2490 compounds; incl. 88 added negatives). Recommended threshold: 0.468.

10 of 18 columns are shown

Source and Deployment
Resource Consumption
  • Model Size (Mb): 615
  • Environment Size (Mb): 7208
  • Image Size (Mb): 7952.88

Computational Performance (seconds):

  • 10 inputs: 81.54
  • 100 inputs: 82.49
  • 10000 inputs: -1
References
License

This package is licensed under a GPL-3.0 license. The model contained within this package is licensed under a GPL-3.0-or-later license.

Notice: Ersilia grants access to models as is, directly from the original authors, please refer to the original code repository and/or publication if you use the model in your research.

Use

To use this model locally, you need to have the Ersilia CLI installed. The model can be fetched using the following command:

# fetch model from the Ersilia Model Hub
ersilia fetch eos8jx6

Then, you can serve, run and close the model as follows:

# serve the model
ersilia serve eos8jx6
# generate an example file
ersilia example -n 3 -f my_input.csv
# run the model
ersilia run -i my_input.csv -o my_output.csv
# close the model
ersilia close

About Ersilia

The Ersilia Open Source Initiative is a tech non-profit organization fueling sustainable research in the Global South. Please cite the Ersilia Model Hub if you've found this model to be useful. Always let us know if you experience any issues while trying to run it. If you want to contribute to our mission, consider donating to Ersilia!

Tag summary

Content type

Image

Digest

sha256:908d7348c

Size

3.9 GB

Last updated

2 months ago

docker pull ersiliaos/eos8jx6

This week's pulls

Pulls:

35

Last week