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If an optional ``[--dir ]`` is passed, then contents of ```` are copied instead.\n\n\nUsage\n-----\n\n.. code::\n\n lungct \\\n [--dir ] \\\n [-h] [--help] \\\n [--json] \\\n [--man] \\\n [--meta] \\\n [--savejson ] \\\n [-v ] [--verbosity ] \\\n [--version] \\\n \n\nArguments\n~~~~~~~~~\n\n.. code::\n\n [--dir ]\n An optional override directory to copy to the .\n Note, if run from a containerized version, this will copy\n a directory from the *container* file system.\n\n [-h] [--help]\n If specified, show help message and exit.\n\n [--json]\n If specified, show json representation of app and exit.\n\n [--man]\n If specified, print (this) man page and exit.\n\n [--meta]\n If specified, print plugin meta data and exit.\n\n [--savejson ]\n If specified, save json representation file to DIR and exit.\n\n [-v ] [--verbosity ]\n Verbosity level for app. Not used currently.\n\n [--version]\n If specified, print version number and exit.\n\n\nGetting inline help is:\n\n.. code:: bash\n\n docker run --rm fnndsc/pl-lungct lungct --man\n\n\nDevelopment\n-----------\n\nBuild the Docker container:\n\n.. code:: bash\n\n docker build --build-arg UID=$UID -t local/pl-lungct .\n\nDebug\n-----\n\nAssuming you are in the root dir of the source repo:\n\n.. code:: bash\n\n docker run -ti \\\n -v $(pwd)/lungct:/usr/local/lib/python3.8/dist-packages/lungct \\\n -v $(pwd)/out:/outgoing \\\n local/pl-lungct lungct /outgoing\n\n\nExamples\n--------\n\nCopy the embedded lung CT data to the ``out`` directory\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\nYou need you need to specify input and output directories using the `-v` flag to `docker run`.\n\n\n.. code:: bash\n\n # 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Digest	OS/ARCH	Compressed size
0e24fe94d283	linux/amd64	49.46 MB
7284da713f79	linux/arm64	48.17 MB
f16a124af4ab	linux/ppc64le	53.63 MB

jennydaman/pl-lungct

Tags for jennydaman/pl-lungct