lindenb/jvarkit repository overview

Dockerfile for jvarkit https://github.com/lindenb/jvarkit⁠

The jar archive for jvarkit is localized under /opt/jvarkit/dist/jvarkit.jar

The container also contains samtools, bcftools, bedtools, bwa . All are installed via apt-get

The container also contains picard under /opt/picard/picard.jar