nf-core

The devcontainer to be used for nf-core development.

Python package with helper tools for the nf-core community. https://nf-co.re/tools

A Docker image for the nf-core/eager pipeline.

All necessary dependencies for the nf-core/pangenome pipeline. See https://nf-co.re/pangenome.

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions.

Docker containers to run licensed Sentieon software: www.sentieon.com

Mirror of container for UniverSC: a flexible cross-platform SC data processing pipeline 

Mirror of universc Single cell tooling - cellranger_clean

VEP images for nf-core pipelines

snpEff images for nf-core pipelines

A Docker image for the nf-core/coproid pipeline.

Workflow for analysis and miRNA target prediction analysis of circRNAs in RNA-Seq data.

illumina bcl-convert. This is not an official image supported by illumina.

A Docker container for the nf-core/sarek pipeline

A Docker container for the nf-core/sarek pipeline

A Docker image for the nf-core/rnafusion pipeline.

A Docker container for the nf-core/sarek pipeline

A Docker container for the nf-core/mnaseseq pipeline.

This contains docker images for nf-core/test-datasets