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staphb

StaPH-B

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Community Organization

State Public Health Bioinformatics Community

Displaying 1 to 30 of 267 repositories

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Freyja: recover relative lineage abundances from mixed SARS-CoV-2 samples from a sequencing dataset

7d

100K+

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BBTools suite of tools from Joint Genome Institute

10d

500K+

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FastQC: A quality control analysis tool for high throughput sequencing data

19d

1M+

2

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Plotting tool for long read sequencing data and alignments

23d

10K+

1

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Software package for assigning SARS-CoV-2 genome sequences to global lineages

25d

1M+

4

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polypolish: a tool for polishing genome assemblies with short reads

27d

10K+

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Viral Annotation DefineR: classification and annotation of viral sequences

27d

1M+

2

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NCBI Datasets: easily gather data from across NCBI databases

1m

10K+