staphb/ivar:1.2.2_artic20200528

Manifest digest

sha256:84ce356155928a6d8924808d8a239d1c0199e6b431876fd4d7e61045942813b7

OS/ARCH

linux/amd64

Compressed size

368.67 MB

Last pushed

over 6 years by staphb

Type

Image

Manifest digest

sha256:84ce356155928a6d8924808d8a239d1c0199e6b431876fd4d7e61045942813b7

Image Layers

Image Layers

1ADD file ... in / 25.45 MB

2/bin/sh -c [ -z "$(apt-get34.54 KB

3/bin/sh -c set -xe &&847 B

4/bin/sh -c mkdir -p /run/systemd161 B

5CMD ["/bin/bash"]0 B

6LABEL base.image=ubuntu:18.040 B

7LABEL container.version=10 B

8LABEL software=iVar0 B

9LABEL software.version=1.2.20 B

10LABEL description=Computational package that0 B

11LABEL comments=Contains iVar 1.2.20 B

12LABEL website=https://github.com/andersen-lab/ivar0 B

13LABEL license=https://github.com/andersen-lab/ivar/blob/master/LICENSE0 B

14LABEL maintainer=Erin Young0 B

15LABEL [email protected]0 B

16LABEL modified.from=https://github.com/andersen-lab/ivar/blob/master/Dockerfile0 B

17LABEL original.maintainer=Kathik G0 B

18LABEL [email protected]0 B

19/bin/sh -c apt-get update20.19 MB

20/bin/sh -c apt-get install -y184.05 MB

21/bin/sh -c git clone -n12.14 MB

22/bin/sh -c for artic_version in1.62 KB

23/bin/sh -c mkdir /reference &&2.06 KB

24/bin/sh -c mkdir seqtk &&188.77 KB

25/bin/sh -c wget https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2 &&2.19 MB

26/bin/sh -c cd root/ &&23.54 MB

27ENV LD_LIBRARY_PATH=/usr/local/lib:0 B

28/bin/sh -c cd root &&20.45 MB

29/bin/sh -c cd root/ &&3.9 MB

30/bin/sh -c mkdir bwa &&1.82 MB

31ENV PATH=/bwa/bwa-0.7.17:/minimap2-2.17_x64-linux:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin0 B

32/bin/sh -c pip3 install pandas74.62 MB

33/bin/sh -c for artic_version in97.15 KB

34/bin/sh -c mkdir /data93 B

35WORKDIR /data0 B

Command

ADD file:c3e6bb316dfa6b81dd4478aaa310df532883b1c0a14edeec3f63d641980c1789 in /