pegi3s/ditasser_db repository overview

⁠This image belongs to a larger project called Bioinformatics Docker Images Project (http://pegi3s.github.io/dockerfiles⁠)

⁠(Please note that the original software licenses still apply)

This image facilitates the usage of ditasser_db, a script that facilitates the retrieval of PDB structures associated with a given UniProt number, from the HPmod database⁠.

⁠Using the ditasser_db image in Linux

You should adapt and run the following command: docker run --rm -v /your/data/dir:/data pegi3s/ditasser_db bash -c "/opt/getditasserpdb UniProt_list"

In this command, you should replace:

• /your/data/dir to point to the working directory, where the retrieved PDB files will be saved.

• UniProt_list to the name of the list, located in the working directory, containing the UniProt numbers, one per line.

If the direct link fails, the full database will be downloaded to retrieve the requested PDB file(s), which may take longer.