Phenotypic Evolution Group

GMAP-GSNAP (http://research-pub.gene.com/gmap/) docker image.

Bioconvert (https://bioconvert.readthedocs.io) docker image.

ABySS (https://github.com/bcgsc/abyss) docker image.

FeatureCounts (www.rdocumentation.org/packages/Rsubread/versions/1.22.2/topics/featureCounts) image.

Root Digger (https://github.com/computations/root_digger) Docker image.

DIAMOND (https://github.com/bbuchfink/diamond) Docker image.

R Project (https://www.r-project.org/) docker image.

A Docker image to map identifiers using the UniProt server through the Unipressed client.

SplitsTree (http://www.splitstree.org/) docker image.

Picard (https://broadinstitute.github.io/picard/) docker image.

A Docker image with different utilities.

MAFFT (https://mafft.cbrc.jp/alignment/server/) Docker image.

GATK 4 (https://gatk.broadinstitute.org/hc/en-us) docker image.

TakeABreak (https://github.com/GATB/TakeABreak/blob/master/README.md) docker image.

NCBI Datasets (https://github.com/ncbi/datasets) docker image

HISAT2 (https://daehwankimlab.github.io/hisat2/) Docker image.

Guidance on how to use the official Trinity (http://trinityrnaseq.github.io/) docker image.

CCP4 (https://www.ccp4.ac.uk/) docker image.

TM-align (https://zhanglab.dcmb.med.umich.edu/TM-align/) docker image.

Biopython (https://biopython.org/) docker image.

Mauve (http://darlinglab.org/mauve/mauve.html) docker image.